RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ELLP55199 621 aaPredicted RBP15.33■□□□□ 0.04
SHKBP1-201ENST00000291842 HBG1P69891 147 aa15.33■□□□□ 0.04
SHKBP1-201ENST00000291842 HBG2P69892 147 aa15.33■□□□□ 0.04
SHKBP1-201ENST00000291842 ZNF474Q6S9Z5 364 aaPredicted RBP15.33■□□□□ 0.04
SHKBP1-201ENST00000291842 BEND4Q6ZU67 534 aa15.33■□□□□ 0.04
SHKBP1-201ENST00000291842 BIN3Q9NQY0 253 aa15.33■□□□□ 0.04
SHKBP1-201ENST00000291842 MBD3L4A6NDZ8 208 aaPredicted RBP15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 MBD3L3A6NE82 208 aaPredicted RBP15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 MBD3L5A6NJ08 208 aaPredicted RBP15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 H3BQ15 152 aa15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 ZNF726P1Q15940 193 aa15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 MBD3L2Q8NHZ7 208 aaPredicted RBP15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 ZDHHC16Q969W1 377 aa15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 ATMQ13315 3056 aa15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 RBMXL2O75526 392 aaKnown RBP15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 CATR1Q13166 79 aa15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 RHEBQ15382 184 aa15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 LRRC75BQ2VPJ9 315 aa15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 ZBTB34Q8NCN2 500 aa15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 EGLN1Q9GZT9 426 aa15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 FAM215AQ9Y5M1 114 aa15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 SMG1Q96Q15 3661 aaKnown RBP15.32■□□□□ 0.04
SHKBP1-201ENST00000291842 IGKV1D-17A0A075B6S4 117 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 PCP4L1A6NKN8 68 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 ZFP92A6NM28 416 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 ZNF727A8MUV8 499 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 IFNL4K9M1U5 179 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 PTAFRP25105 342 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 SLC38A11Q08AI6 406 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 SNIP1Q8TAD8 396 aaKnown RBP15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 ZNF665Q9H7R5 613 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 LRRC30A6NM36 301 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 MT-ND4LP03901 98 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 RAB2AP61019 212 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 ZNF506Q5JVG8 444 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 ZNRF1Q8ND25 227 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 RBMXL1Q96E39 390 aaKnown RBP15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 LURAP1Q96LR2 239 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 SMDT1Q9H4I9 107 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 HSPB7Q9UBY9 170 aa15.31■□□□□ 0.04
SHKBP1-201ENST00000291842 C15orf65H3BRN8 121 aa15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 SPRY3O43610 288 aa15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 ZG16O60844 167 aa15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 HBE1P02100 147 aa15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 P0C879 139 aa15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 PAX6P26367 422 aa15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 RAB5BP61020 215 aa15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 SNRPEP62304 92 aaKnown RBP15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 FAM201AQ5SY85 155 aa15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 DPPA3Q6W0C5 159 aa15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 ZNF429Q86V71 674 aa15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 KDF1Q8NAX2 398 aaPredicted RBP15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 RAB39BQ96DA2 213 aa15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 OR2V2Q96R30 315 aa15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 WDR61Q9GZS3 305 aaKnown RBP15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 FAM234AQ9H0X4 552 aa15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 COA4Q9NYJ1 87 aa15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 KLF2Q9Y5W3 355 aaPredicted RBP15.3■□□□□ 0.04
SHKBP1-201ENST00000291842 C1orf196B1AJZ1 125 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 TM4SF5O14894 197 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 SPINT2O43291 252 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 ZNF737O75373 536 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 FOLR2P14207 255 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 TUBG1P23258 451 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 RPS23P62266 143 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 MSMO1Q15800 293 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 ZNF787Q6DD87 383 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 ADAM5Q6NVV9 412 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 MOGAT3Q86VF5 341 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 AGMATQ9BSE5 352 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 TUBG2Q9NRH3 451 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 H2BFWTQ7Z2G1 175 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 GCSAMQ8N6F7 178 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 RCC1LQ96I51 464 aaKnown RBP15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 TUBA4BQ9H853 241 aa15.29■□□□□ 0.04
SHKBP1-201ENST00000291842 FAM90A26D6RGX4 464 aa15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 OR2C1O95371 312 aa15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 HSPB1P04792 205 aaKnown RBP15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 RAB5AP20339 215 aa15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 TAGLN2P37802 199 aaKnown RBP15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 OR2B8PP59922 312 aa15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 NCR3LG1Q68D85 454 aa15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 TMEM14EPQ6UXP3 125 aa15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 TAF15Q92804 592 aaKnown RBP eCLIP15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 TOLLIPQ9H0E2 274 aa15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 GNG12Q9UBI6 72 aa15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 A0A1W2PPE3 182 aa15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 SRRM5B3KS81 715 aa15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 HMGB3O15347 200 aaKnown RBP15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 PPIHO43447 177 aaKnown RBP15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 EDDM3BP56851 147 aa15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 IGF2-ASQ6U949 168 aa15.28■□□□□ 0.04
SHKBP1-201ENST00000291842 LOC102723971A0A1B0GUV8 181 aa15.27■□□□□ 0.04
SHKBP1-201ENST00000291842 PROP1O75360 226 aa15.27■□□□□ 0.04
SHKBP1-201ENST00000291842 SELLP14151 372 aa15.27■□□□□ 0.04
SHKBP1-201ENST00000291842 HOXA1P49639 335 aaPredicted RBP15.27■□□□□ 0.04
SHKBP1-201ENST00000291842 DLK1P80370 383 aa15.27■□□□□ 0.04
SHKBP1-201ENST00000291842 TLE1Q04724 770 aa15.27■□□□□ 0.04
SHKBP1-201ENST00000291842 UTF1Q5T230 341 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms