RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 SLC25A22Q9H936 323 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 TRAPPC2LQ9UL33 140 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 FREM1Q5H8C1 2179 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 PINLYPA6NC86 204 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 HMGB3O15347 200 aaKnown RBP14.84□□□□□ -0.03
SYNE3-202ENST00000553340 NDUFB7P17568 137 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 CYB561P49447 251 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 PLP2Q04941 152 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 ACSM6Q6P461 480 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 TUSC5Q8IXB3 177 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 TMEM170AQ8WVE7 144 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 ANAPC16Q96DE5 110 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 PCGF1Q9BSM1 259 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 KIAA2026Q5HYC2 2103 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 A0A1W2PPQ1 181 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 LILRA1O75019 489 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 RHBDL1O75783 438 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 MBP02144 154 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 TLE1Q04724 770 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 TNFRSF9Q07011 255 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 TRA2AQ13595 282 aaKnown RBP eCLIP14.84□□□□□ -0.03
SYNE3-202ENST00000553340 HNF4GQ14541 408 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 P2RY6Q15077 328 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 PPP1R32Q7Z5V6 425 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 ZNF664Q8N3J9 261 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 OR4F5Q8NH21 305 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 OR4F4Q96R69 305 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 MANBALQ9NQG1 85 aa14.84□□□□□ -0.03
SYNE3-202ENST00000553340 RNF212BA8MTL3 300 aa14.83□□□□□ -0.03
SYNE3-202ENST00000553340 ST8SIA5O15466 376 aa14.83□□□□□ -0.03
SYNE3-202ENST00000553340 HOXA6P31267 233 aa14.83□□□□□ -0.03
SYNE3-202ENST00000553340 PDLIM4P50479 330 aa14.83□□□□□ -0.03
SYNE3-202ENST00000553340 Q6P435 159 aa14.83□□□□□ -0.03
SYNE3-202ENST00000553340 DRAM1Q8N682 238 aa14.83□□□□□ -0.03
SYNE3-202ENST00000553340 ZNF705GA8MUZ8 300 aaPredicted RBP14.83□□□□□ -0.04
SYNE3-202ENST00000553340 ATP6V1FQ16864 119 aa14.83□□□□□ -0.04
SYNE3-202ENST00000553340 OR10G9Q8NGN4 311 aa14.83□□□□□ -0.04
SYNE3-202ENST00000553340 OR10G7Q8NGN6 311 aa14.83□□□□□ -0.04
SYNE3-202ENST00000553340 MISP3Q96FF7 219 aa14.83□□□□□ -0.04
SYNE3-202ENST00000553340 ELOVL1Q9BW60 279 aa14.83□□□□□ -0.04
SYNE3-202ENST00000553340 CEACAM6P40199 344 aa14.82□□□□□ -0.04
SYNE3-202ENST00000553340 NUBP1P53384 320 aa14.82□□□□□ -0.04
SYNE3-202ENST00000553340 RTP5Q14D33 572 aa14.82□□□□□ -0.04
SYNE3-202ENST00000553340 ZNF497Q6ZNH5 498 aa14.82□□□□□ -0.04
SYNE3-202ENST00000553340 UBALD1Q8TB05 177 aa14.82□□□□□ -0.04
SYNE3-202ENST00000553340 NDUFAF3Q9BU61 184 aa14.82□□□□□ -0.04
SYNE3-202ENST00000553340 BOKQ9UMX3 212 aaPredicted RBP14.82□□□□□ -0.04
SYNE3-202ENST00000553340 J3QT63 122 aa14.82□□□□□ -0.04
SYNE3-202ENST00000553340 SIRPB1O00241 398 aa14.82□□□□□ -0.04
SYNE3-202ENST00000553340 SSX2Q16385 188 aa14.82□□□□□ -0.04
SYNE3-202ENST00000553340 CLEC12BQ2HXU8 276 aa14.82□□□□□ -0.04
SYNE3-202ENST00000553340 ACOT6Q3I5F7 207 aaPredicted RBP14.82□□□□□ -0.04
SYNE3-202ENST00000553340 DMRTC2Q8IXT2 367 aaPredicted RBP14.82□□□□□ -0.04
SYNE3-202ENST00000553340 OR2T10Q8NGZ9 312 aa14.82□□□□□ -0.04
SYNE3-202ENST00000553340 TMEM147Q9BVK8 224 aa14.82□□□□□ -0.04
SYNE3-202ENST00000553340 HSPB7Q9UBY9 170 aa14.82□□□□□ -0.04
SYNE3-202ENST00000553340 WDFY3Q8IZQ1 3526 aa14.82□□□□□ -0.04
SYNE3-202ENST00000553340 CA6P23280 308 aa14.81□□□□□ -0.04
SYNE3-202ENST00000553340 USF2Q15853 346 aaPredicted RBP14.81□□□□□ -0.04
SYNE3-202ENST00000553340 TMEM37Q8WXS4 190 aa14.81□□□□□ -0.04
SYNE3-202ENST00000553340 NTN3O00634 580 aaPredicted RBP14.81□□□□□ -0.04
SYNE3-202ENST00000553340 GYPAP02724 150 aa14.81□□□□□ -0.04
SYNE3-202ENST00000553340 SRP14P37108 136 aaKnown RBP14.81□□□□□ -0.04
SYNE3-202ENST00000553340 MSMO1Q15800 293 aa14.81□□□□□ -0.04
SYNE3-202ENST00000553340 ACTL10Q5JWF8 245 aa14.81□□□□□ -0.04
SYNE3-202ENST00000553340 BEND2Q8NDZ0 799 aa14.81□□□□□ -0.04
SYNE3-202ENST00000553340 TMEM18Q96B42 140 aa14.81□□□□□ -0.04
SYNE3-202ENST00000553340 FUT9Q9Y231 359 aa14.81□□□□□ -0.04
SYNE3-202ENST00000553340 TP53TG5Q9Y2B4 290 aa14.81□□□□□ -0.04
SYNE3-202ENST00000553340 A0A1W2PR80 420 aa14.8□□□□□ -0.04
SYNE3-202ENST00000553340 GGCTO75223 188 aaKnown RBP14.8□□□□□ -0.04
SYNE3-202ENST00000553340 SYNGR4O95473 234 aa14.8□□□□□ -0.04
SYNE3-202ENST00000553340 OR2H2O95918 312 aa14.8□□□□□ -0.04
SYNE3-202ENST00000553340 COX5AP20674 150 aa14.8□□□□□ -0.04
SYNE3-202ENST00000553340 CISD2Q8N5K1 135 aaKnown RBP14.8□□□□□ -0.04
SYNE3-202ENST00000553340 GATAD1Q8WUU5 269 aa14.8□□□□□ -0.04
SYNE3-202ENST00000553340 APH1AQ96BI3 265 aa14.8□□□□□ -0.04
SYNE3-202ENST00000553340 OR51B6Q9H340 312 aa14.8□□□□□ -0.04
SYNE3-202ENST00000553340 UBE2ZQ9H832 354 aaPredicted RBP14.8□□□□□ -0.04
SYNE3-202ENST00000553340 VENTXO95231 258 aa14.8□□□□□ -0.04
SYNE3-202ENST00000553340 SELLP14151 372 aa14.8□□□□□ -0.04
SYNE3-202ENST00000553340 LHX2P50458 406 aa14.8□□□□□ -0.04
SYNE3-202ENST00000553340 FFAR4Q5NUL3 377 aa14.8□□□□□ -0.04
SYNE3-202ENST00000553340 NEIL1Q96FI4 390 aaPredicted RBP14.8□□□□□ -0.04
SYNE3-202ENST00000553340 LURAP1Q96LR2 239 aa14.8□□□□□ -0.04
SYNE3-202ENST00000553340 PLA2G5P39877 138 aa14.79□□□□□ -0.04
SYNE3-202ENST00000553340 SPINK14Q6IE38 97 aa14.79□□□□□ -0.04
SYNE3-202ENST00000553340 KCNIP4Q6PIL6 250 aa14.79□□□□□ -0.04
SYNE3-202ENST00000553340 OR10P1Q8NGE3 313 aa14.79□□□□□ -0.04
SYNE3-202ENST00000553340 OR6C3Q9NZP0 311 aa14.79□□□□□ -0.04
SYNE3-202ENST00000553340 PILRBQ9UKJ0 227 aa14.79□□□□□ -0.04
SYNE3-202ENST00000553340 KRASP01116 189 aa14.79□□□□□ -0.04
SYNE3-202ENST00000553340 TYMSP04818 313 aa14.79□□□□□ -0.04
SYNE3-202ENST00000553340 WNT5AP41221 380 aa14.79□□□□□ -0.04
SYNE3-202ENST00000553340 ESPL1Q14674 2120 aa14.79□□□□□ -0.04
SYNE3-202ENST00000553340 MBNL3Q9NUK0 354 aaKnown RBP14.79□□□□□ -0.04
SYNE3-202ENST00000553340 B4E171 279 aa14.79□□□□□ -0.04
SYNE3-202ENST00000553340 PAGE4O60829 102 aa14.79□□□□□ -0.04
SYNE3-202ENST00000553340 SERPINA7P05543 415 aa14.79□□□□□ -0.04
SYNE3-202ENST00000553340 TSPAN7P41732 249 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms