RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CAMPP49913 170 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 MEOX1P50221 254 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 EGR4Q05215 589 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 KIAA1644Q3SXP7 199 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 PRAMEF5Q5TYX0 476 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 PRAMEF6Q5VXH4 476 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 DEGS2Q6QHC5 323 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 OR10G4Q8NGN3 311 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 OR10G9Q8NGN4 311 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 OR10G7Q8NGN6 311 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 OR4A16Q8NH70 328 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 SGMS2Q8NHU3 365 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 RNF133Q8WVZ7 376 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 PP6455Q8WZ26 134 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 AQP3Q92482 292 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 CIB3Q96Q77 187 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-203ENST00000547825 CCNL2Q96S94 520 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-203ENST00000547825 HSPB9Q9BQS6 159 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 MOB1AQ9H8S9 216 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 BARX1Q9HBU1 254 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-203ENST00000547825 JKAMPQ9P055 326 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 A6NNC1 897 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 HIST1H2BKO60814 126 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF253O75346 499 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 GYPAP02724 150 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 HIST1H2BJP06899 126 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 HOXC4P09017 264 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-203ENST00000547825 DANCRP0C864 163 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 CD59P13987 128 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 TMEM11P17152 192 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 ANOS1P23352 680 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 HIST1H2BOP23527 126 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 HIST1H2BBP33778 126 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 TFPI2P48307 235 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 HIST1H2BDP58876 126 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 HIST1H2BCP62807 126 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 CATR1Q13166 79 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 HIST2H2BEQ16778 126 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 TMEM183BQ1AE95 376 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 ACOT6Q3I5F7 207 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-203ENST00000547825 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-203ENST00000547825 MRPL54Q6P161 138 aaKnown RBP4.71□□□□□ -1.66
LIMA1-203ENST00000547825 NOXO1Q8NFA2 376 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 M1APQ8TC57 530 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 MRPL30Q8TCC3 161 aaKnown RBP4.71□□□□□ -1.66
LIMA1-203ENST00000547825 HIST1H2BHQ93079 126 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 STARD4Q96DR4 205 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 OXGR1Q96P68 337 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 HIST1H2BNQ99877 126 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 HIST1H2BMQ99879 126 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 FAM173AQ9BQD7 235 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 TMEM9BQ9NQ34 198 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 SLC35D1Q9NTN3 355 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 TECRQ9NZ01 308 aaKnown RBP4.71□□□□□ -1.66
LIMA1-203ENST00000547825 KIAA1456Q9P272 454 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 EML6Q6ZMW3 1958 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 IGKV1D-43A0A0B4J1Z2 117 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 WIPF3A6NGB9 483 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 RAB29O14966 203 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 BGLAPP02818 100 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF32P17041 273 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 IER3P46695 156 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 ARG2P78540 354 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 MRPL49Q13405 166 aaKnown RBP4.71□□□□□ -1.66
LIMA1-203ENST00000547825 RNF144BQ7Z419 303 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 WDFY1Q8IWB7 410 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 CNEP1R1Q8N9A8 125 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 POC1AQ8NBT0 407 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 OR10V1Q8NGI7 309 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 OR1P1Q8NH06 330 aa4.71□□□□□ -1.66
LIMA1-203ENST00000547825 PTPMT1Q8WUK0 201 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-203ENST00000547825 TNRC6AQ8NDV7 1962 aaKnown RBP4.71□□□□□ -1.66
LIMA1-203ENST00000547825 KALRNO60229 2985 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 IGHV3-43A0A0B4J1X8 118 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 LNP1A1A4G5 178 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 FBLL1A6NHQ2 334 aaKnown RBP4.7□□□□□ -1.66
LIMA1-203ENST00000547825 UBE2CO00762 179 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 ZIC3O60481 467 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 PDCD6O75340 191 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF217O75362 1048 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 CXCL1P09341 107 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 IGHV3-43DP0DP04 118 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 HIST1H1BP16401 226 aaKnown RBP4.7□□□□□ -1.66
LIMA1-203ENST00000547825 VDAC1P21796 283 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 CAPZBP47756 277 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 ZNF134P52741 427 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 TMEM50BP56557 158 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 TAS2R60P59551 318 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 PCBD1P61457 104 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 DCDP81605 110 aaKnown RBP4.7□□□□□ -1.66
LIMA1-203ENST00000547825 TIGITQ495A1 244 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 KIAA0895LQ68EN5 471 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 LINC00696Q6ZRV3 163 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 C17orf82Q86X59 251 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-203ENST00000547825 SLC22A18ASQ8N1D0 253 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 LINC00482Q8N8I6 264 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 OR5B3Q8NH48 314 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 SSMEM1Q8WWF3 244 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 ST8SIA1Q92185 356 aa4.7□□□□□ -1.66
LIMA1-203ENST00000547825 DAZAP1Q96EP5 407 aaKnown RBP4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms