RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 LIN7CQ9NUP9 197 aaKnown RBP8.36□□□□□ -1.07
CD44-227ENST00000528086 SLC23A1Q9UHI7 598 aa8.36□□□□□ -1.07
CD44-227ENST00000528086 ZNF230Q9UIE0 474 aaPredicted RBP8.36□□□□□ -1.07
CD44-227ENST00000528086 FBXO7Q9Y3I1 522 aa8.36□□□□□ -1.07
CD44-227ENST00000528086 NCBP2LA6PVI3 153 aaKnown RBP8.35□□□□□ -1.07
CD44-227ENST00000528086 H3BUI4 141 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 ITGB1BP1O14713 200 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 FCGR3AP08637 254 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 IGLL1P15814 213 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 RAB3BP20337 219 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 GADD45AP24522 165 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 IL3RAP26951 378 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 TGFBR1P36897 503 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 ACTBP60709 375 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 RPL23AP62750 156 aaKnown RBP8.35□□□□□ -1.07
CD44-227ENST00000528086 C19orf54Q5BKX5 351 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 IGSF11Q5DX21 431 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 MOB1BQ7L9L4 216 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 SLC35E3Q7Z769 313 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 RNF152Q8N8N0 203 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 OR56B1Q8NGI3 324 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 OR10R2Q8NGX6 335 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 SETD6Q8TBK2 473 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 MAFIPQ8WZ33 124 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 CMSS1Q9BQ75 279 aaKnown RBP8.35□□□□□ -1.07
CD44-227ENST00000528086 RIMS4Q9H426 269 aaPredicted RBP8.35□□□□□ -1.07
CD44-227ENST00000528086 C12orf4Q9NQ89 552 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 RNF150Q9ULK6 438 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 STUB1Q9UNE7 303 aa8.35□□□□□ -1.07
CD44-227ENST00000528086 TSSC4Q9Y5U2 329 aaPredicted RBP8.35□□□□□ -1.07
CD44-227ENST00000528086 IGHV7-81A0A0B4J1V7 117 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 SERPINE3A8MV23 424 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 H0YJW9 148 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 FCN1O00602 326 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 TXNL1O43396 289 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 PEX14O75381 377 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 NDUFA3O95167 84 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 RPLP1P05386 114 aaKnown RBP8.34□□□□□ -1.07
CD44-227ENST00000528086 GSTT2P0CG29 244 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 GSTT2BP0CG30 244 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 EGR2P11161 476 aaPredicted RBP8.34□□□□□ -1.07
CD44-227ENST00000528086 HIST1H1DP16402 221 aaKnown RBP8.34□□□□□ -1.07
CD44-227ENST00000528086 RAB6AP20340 208 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 PPIFP30405 207 aaKnown RBP8.34□□□□□ -1.07
CD44-227ENST00000528086 SDC2P34741 201 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 CEACAM6P40199 344 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 SSBP2P81877 361 aaPredicted RBP8.34□□□□□ -1.07
CD44-227ENST00000528086 KCTD21Q4G0X4 260 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 FAM131AQ6UXB0 335 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 LINC00482Q8N8I6 264 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 ZNF383Q8NA42 475 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 DRAXINQ8NBI3 349 aaPredicted RBP8.34□□□□□ -1.07
CD44-227ENST00000528086 NPBQ8NG41 125 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 OR2AK2Q8NG84 335 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 OR4F17Q8NGA8 305 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 OR5AN1Q8NGI8 311 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 OR5H6Q8NGV6 325 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 MYOZ3Q8TDC0 251 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 CHPT1Q8WUD6 406 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 PHF21AQ96BD5 680 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 RAB3CQ96E17 227 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 OR4F4Q96R69 305 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 P2RX4Q99571 388 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 CABLES2Q9BTV7 478 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 CENPOQ9BU64 300 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 KLK15Q9H2R5 256 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 CHMP1AQ9HD42 196 aaPredicted RBP8.34□□□□□ -1.07
CD44-227ENST00000528086 RAB9BQ9NP90 201 aa8.34□□□□□ -1.07
CD44-227ENST00000528086 TRBV6-7A0A0A0MS04 114 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 NOTOA8MTQ0 251 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 TRDCB7Z8K6 153 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 G3V318 75 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 PDCD5O14737 125 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 SSX5O60225 188 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 SOX15O60248 233 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 IGF1P05019 195 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 MYL9P24844 172 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 THBS3P49746 956 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 PSMD7P51665 324 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 KRTAP10-11P60412 298 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 COL7A1Q02388 2944 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 C5orf64Q2M2E5 130 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 MRGPRG-AS1Q2M3A8 158 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 FAM71F2Q6NXP2 309 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 C8orf86Q6ZUL3 223 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 MRPL41Q8IXM3 137 aaKnown RBP8.33□□□□□ -1.08
CD44-227ENST00000528086 OR8H1Q8NGG4 311 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 FCGR1BQ92637 280 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 SLC25A38Q96DW6 304 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 DUX3Q96PT4 197 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.33□□□□□ -1.08
CD44-227ENST00000528086 TPSG1Q9NRR2 321 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 RDH8Q9NYR8 311 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 ABRACLQ9P1F3 81 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 ZNF580Q9UK33 172 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 GAB2Q9UQC2 676 aa8.33□□□□□ -1.08
CD44-227ENST00000528086 A0A075B6Q4 140 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 TRIM64CA6NLI5 447 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 AP4M1O00189 453 aa8.32□□□□□ -1.08
CD44-227ENST00000528086 RAB29O14966 203 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 209.8 ms