RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 IFI27L2Q9H2X8 130 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 ABCB10Q9NRK6 738 aa12.11□□□□□ -0.47
NUP54-213ENST00000513352 BTBD17A6NE02 478 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 RAB29O14966 203 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 RAB3DO95716 219 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 GAPDHP04406 335 aaKnown RBP12.1□□□□□ -0.47
NUP54-213ENST00000513352 AADACP22760 399 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 LUMP51884 338 aaPredicted RBP12.1□□□□□ -0.47
NUP54-213ENST00000513352 BAMBIQ13145 260 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 DYRK1AQ13627 763 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 DIAPH2-AS1Q14236 149 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 TRIQKQ629K1 86 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 CCDC144NLQ6NUI1 221 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 STEAP1BQ6NZ63 245 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 MOB3BQ86TA1 216 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 TGIF2LXQ8IUE1 241 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 GDPD1Q8N9F7 314 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 S100ZQ8WXG8 99 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 AJUBAQ96IF1 538 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 DUX5Q96PT3 197 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 ZNF2Q9BSG1 426 aaPredicted RBP12.1□□□□□ -0.47
NUP54-213ENST00000513352 AKIP1Q9NQ31 210 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 TAS2R8Q9NYW2 309 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 PIPOXQ9P0Z9 390 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 OR2W1Q9Y3N9 320 aa12.1□□□□□ -0.47
NUP54-213ENST00000513352 SAA2-SAA4A0A096LPE2 208 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 LY6LH3BQJ8 138 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 ITGB1BP1O14713 200 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 PPYP01298 95 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 IFNA2P01563 188 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 AKAIN1P0CW23 69 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 SAA2P0DJI9 122 aaPredicted RBP12.09□□□□□ -0.47
NUP54-213ENST00000513352 TBPP20226 339 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 LRRC75BQ2VPJ9 315 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 RPL39P5Q59GN2 51 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 ZNF57Q68EA5 555 aaPredicted RBP12.09□□□□□ -0.47
NUP54-213ENST00000513352 OVCH2Q7RTZ1 564 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 TMEM17Q86X19 198 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 MFSD4AQ8N468 514 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 SECTM1Q8WVN6 248 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 S1PR3Q99500 378 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 SSX3Q99909 188 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 TINAGL1Q9GZM7 467 aaPredicted RBP12.09□□□□□ -0.47
NUP54-213ENST00000513352 TOLLIPQ9H0E2 274 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 RBMX2Q9Y388 322 aaKnown RBP12.09□□□□□ -0.47
NUP54-213ENST00000513352 MXRA5Q9NR99 2828 aa12.09□□□□□ -0.47
NUP54-213ENST00000513352 IGKV1D-13A0A0B4J2D9 117 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 ANKRD20A5PA0PJZ0 165 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 OOSP1A8MZH6 123 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 H3BUX3 64 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 HOXA3O43365 443 aaPredicted RBP12.08□□□□□ -0.48
NUP54-213ENST00000513352 IGHV4-59P01825 116 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 AMY2AP04746 511 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 IGKV1-13P0DP09 117 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 AP3S2P59780 193 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 SCGB2B2Q4G0G5 96 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 FAAP20Q6NZ36 180 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 Q6YL49 198 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 LINC00299Q6ZSB3 139 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 OR8H3Q8N146 312 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 TOMM5Q8N4H5 51 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 OR4D10Q8NGI6 311 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 OR6F1Q8NGZ6 308 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 SSMEM1Q8WWF3 244 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 RTN4IP1Q8WWV3 396 aaPredicted RBP12.08□□□□□ -0.48
NUP54-213ENST00000513352 TRIM63Q969Q1 353 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 MRPL20Q9BYC9 149 aaKnown RBP12.08□□□□□ -0.48
NUP54-213ENST00000513352 SLC5A7Q9GZV3 580 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 MEGF9Q9H1U4 602 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 DPAGT1Q9H3H5 408 aa12.08□□□□□ -0.48
NUP54-213ENST00000513352 ZNF107Q9UII5 783 aaPredicted RBP12.08□□□□□ -0.48
NUP54-213ENST00000513352 IGHV3-72A0A0B4J1Y9 119 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 IGHV1-3A0A0C4DH29 117 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 A0A1W2PPI3 338 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 DNAJC9-AS1A6NH13 148 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 M0R1X1 148 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 TIMM23O14925 209 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 TXNL1O43396 289 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 TCF21O43680 179 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 TUSC2O75896 110 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 BRS3P32247 399 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 FAUP35544 74 aaKnown RBP12.07□□□□□ -0.48
NUP54-213ENST00000513352 RAB13P51153 203 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 ZNF137PP52743 207 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 ZNF816Q0VGE8 651 aaPredicted RBP12.07□□□□□ -0.48
NUP54-213ENST00000513352 ZNF846Q147U1 533 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 MEF2DQ14814 521 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 LY6EQ16553 131 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 VAX1Q5SQQ9 334 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 LDLRAD3Q86YD5 345 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 ODF3L1Q8IXM7 274 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 DRAM1Q8N682 238 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 OR4C16Q8NGL9 310 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 OR56B4Q8NH76 319 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 CAPSLQ8WWF8 208 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 GIMAP1Q8WWP7 306 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 ST6GALNAC6Q969X2 333 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 JMJD8Q96S16 334 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 AGMATQ9BSE5 352 aa12.07□□□□□ -0.48
NUP54-213ENST00000513352 WDR12Q9GZL7 423 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms