RNA–Protein interactions for RNA: ENST00000502802.1

HMGB1P3-201, Transcript of high mobility group box 1 pseudogene 3, humanhuman

BASIC

Gene HMGB1P3, Length 616 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P3-201ENST00000502802 CXCL16Q9H2A7 254 aa3.13□□□□□ -1.91
HMGB1P3-201ENST00000502802 RHOFQ9HBH0 211 aa3.13□□□□□ -1.91
HMGB1P3-201ENST00000502802 ZNF706Q9Y5V0 76 aaPredicted RBP3.13□□□□□ -1.91
HMGB1P3-201ENST00000502802 CNOT1A5YKK6 2376 aaKnown RBP3.13□□□□□ -1.91
HMGB1P3-201ENST00000502802 GPR179Q6PRD1 2367 aa3.13□□□□□ -1.91
HMGB1P3-201ENST00000502802 NBEAQ8NFP9 2946 aa3.13□□□□□ -1.91
HMGB1P3-201ENST00000502802 NUP205Q92621 2012 aa3.13□□□□□ -1.91
HMGB1P3-201ENST00000502802 TPRP12270 2363 aaKnown RBP3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 ZZEF1O43149 2961 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 TSC2P49815 1807 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 KIAA1549LQ6ZVL6 1849 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 TRAV8-3A0A0A6YYJ7 113 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 TRAV8-2A0A0B4J237 113 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 C1orf232A0A0U1RR37 186 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 FABP12A6NFH5 140 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 FAM183AA6NL82 134 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 COLCA2A8K830 154 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 C9J4A7 227 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 J3QLI3 93 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 LGALS9O00182 355 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 ITGB1BP1O14713 200 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 SOD3P08294 240 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 ELK4P28324 431 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 SLC6A1P30531 599 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 TGFBR1P36897 503 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 NUDT2P50583 147 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 STC1P52823 247 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 RAB25P57735 213 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 TIMM23BQ5SRD1 257 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 FAM162BQ5T6X4 162 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 ZNF773Q6PK81 442 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 DGAT2L6Q6ZPD8 337 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 KRT222Q8N1A0 295 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 ZNF709Q8N972 641 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 APCDD1LQ8NCL9 501 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 TMEM56Q96MV1 263 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 LINC01587Q99440 93 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 DHX35Q9H5Z1 703 aaKnown RBP3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 LINC00574Q9H8X3 128 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 WDR54Q9H977 334 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 CYTL1Q9NRR1 136 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 COMMD9Q9P000 198 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 PSMD13Q9UNM6 376 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 ZNF835Q9Y2P0 537 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 PTPRDP23468 1912 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 HELZP42694 1942 aaKnown RBP3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 DYSFO75923 2080 aa3.12□□□□□ -1.91
HMGB1P3-201ENST00000502802 DMXL2Q8TDJ6 3036 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 THADAQ6YHU6 1953 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 WDFY3Q8IZQ1 3526 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 LRCOL1A6NCL2 159 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 RGS5O15539 181 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 SYNGR1O43759 233 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 CXorf1O96002 111 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 CA2P00918 260 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 IGHV1-46P01743 117 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 S100A6P06703 90 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 SCGB1C2P0DMR2 95 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 SPNP16150 400 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 PVALBP20472 110 aaPredicted RBP3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 CTAG1AP78358 180 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 TTMPQ5BVD1 217 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 SLC25A34Q6PIV7 304 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 NEGR1Q7Z3B1 354 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 OR8A1Q8NGG7 326 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 SCGB1C1Q8TD33 95 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 CASTOR1Q8WTX7 329 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 TWIST2Q8WVJ9 160 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 PPP1R36Q96LQ0 422 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 DCUN1D5Q9BTE7 237 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 C1orf50Q9BV19 199 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 ZNF436Q9C0F3 470 aaPredicted RBP3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 C14orf166Q9Y224 244 aaKnown RBP3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 CHD8Q9HCK8 2581 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 CACNA1BQ00975 2339 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 CLUHO75153 1309 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 KMT2BQ9UMN6 2715 aaPredicted RBP3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 SPEGQ15772 3267 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 MAP1BP46821 2468 aaKnown RBP3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 NCOR2Q9Y618 2525 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 AKAP13Q12802 2813 aa3.11□□□□□ -1.91
HMGB1P3-201ENST00000502802 DSPP15924 2871 aaKnown RBP3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 BPTFQ12830 3046 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 GOLGA6L10A6NI86 522 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 EFCAB9A8MZ26 197 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 CCL16O15467 120 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 ATF1P18846 271 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 S100A5P33763 92 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 CBX5P45973 191 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 TGM4P49221 684 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 DLX6P56179 175 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 KRTAP12-2P59991 146 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 HTR4Q13639 388 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 MOBPQ13875 183 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 CLEC18BQ6UXF7 455 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 ALKAL1Q6UXT8 129 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 FUNDC1Q8IVP5 155 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 ZBTB8OSQ8IWT0 167 aa3.1□□□□□ -1.91
HMGB1P3-201ENST00000502802 H1FOOQ8IZA3 346 aaPredicted RBP3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms