RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 SND1-IT1Q9HBX3 110 aa2.88□□□□□ -1.95
VPS13D-207ENST00000476169 C8orf17Q9NRJ1 99 aa2.88□□□□□ -1.95
VPS13D-207ENST00000476169 CA10Q9NS85 328 aa2.88□□□□□ -1.95
VPS13D-207ENST00000476169 TAC3Q9UHF0 121 aa2.88□□□□□ -1.95
VPS13D-207ENST00000476169 ENOPH1Q9UHY7 261 aa2.88□□□□□ -1.95
VPS13D-207ENST00000476169 RAB26Q9ULW5 256 aa2.88□□□□□ -1.95
VPS13D-207ENST00000476169 PXDNLA1KZ92 1463 aa2.88□□□□□ -1.95
VPS13D-207ENST00000476169 CLUHO75153 1309 aa2.88□□□□□ -1.95
VPS13D-207ENST00000476169 AKAP12Q02952 1782 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 C10orf71Q711Q0 1435 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 IGHV3-72A0A0B4J1Y9 119 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 IGHV7-4-1A0A0J9YVY3 117 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 A0A1B0GUA9 196 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 TCF21O43680 179 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 LY6G6DO95868 133 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 ATP5G1P05496 136 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 OR4E1P0C645 316 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 CD36P16671 472 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 GABARAPL2P60520 117 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 PFN3P60673 137 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 MPPED2Q15777 294 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 ABCA11PQ4W5N1 156 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 TRMT12Q53H54 448 aaKnown RBP2.87□□□□□ -1.95
VPS13D-207ENST00000476169 MESTQ5EB52 335 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 ACSBG2Q5FVE4 666 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 RNASE13Q5GAN3 156 aaKnown RBP2.87□□□□□ -1.95
VPS13D-207ENST00000476169 TEX30Q5JUR7 227 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 Q6ZR54 194 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 ZBTB8OSQ8IWT0 167 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 OR6V1Q8N148 313 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 LYG1Q8N1E2 194 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 ZIC4Q8N9L1 334 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 PXT1Q8NFP0 134 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 SDHCQ99643 169 aaPredicted RBP2.87□□□□□ -1.95
VPS13D-207ENST00000476169 TBL1YQ9BQ87 522 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 EIF5A2Q9GZV4 153 aaKnown RBP2.87□□□□□ -1.95
VPS13D-207ENST00000476169 PLEKHF2Q9H8W4 249 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 FKBP14Q9NWM8 211 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 YTHDF2Q9Y5A9 579 aaKnown RBP2.87□□□□□ -1.95
VPS13D-207ENST00000476169 SLC22A7Q9Y694 548 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 ZNFX1Q9P2E3 1918 aaKnown RBP2.87□□□□□ -1.95
VPS13D-207ENST00000476169 ITSN1Q15811 1721 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 SHANK3Q9BYB0 1731 aa2.87□□□□□ -1.95
VPS13D-207ENST00000476169 PARP4Q9UKK3 1724 aaKnown RBP2.86□□□□□ -1.95
VPS13D-207ENST00000476169 TRBV6-6A0A0A6YYG2 114 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 WI2-2373I1.2A0A1W2PRP0 233 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 TMEM223A0PJW6 202 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 C5orf49A4QMS7 147 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 B4DEV8 164 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 H0YJX3 145 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 TMX2-CTNND1H3BSU7 103 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 BPY2O14599 106 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 SOCS1O15524 211 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 IGLV3-25P01717 112 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 HLA-DQB1P01920 261 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 CRYBA1P05813 215 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 FBP1P09467 338 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 ZNF708P17019 499 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 ORM2P19652 201 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 NUDT2P50583 147 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 ESRRGP62508 458 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 RPL19P84098 196 aaKnown RBP2.86□□□□□ -1.95
VPS13D-207ENST00000476169 JOSD1Q15040 202 aaPredicted RBP2.86□□□□□ -1.95
VPS13D-207ENST00000476169 BATFQ16520 125 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 ZNF658BQ4V348 819 aaPredicted RBP2.86□□□□□ -1.95
VPS13D-207ENST00000476169 TMEM215Q68D42 235 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 ATP5L2Q7Z4Y8 100 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 VN1R4Q7Z5H5 301 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 LINC01551Q86U37 167 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 CALHM3Q86XJ0 350 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 C11orf42Q8N5U0 333 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 OR2Z1Q8NG97 314 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 OR2K2Q8NGT1 345 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 NEK7Q8TDX7 302 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 Q8WTZ3 238 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 APOBEC3DQ96AK3 386 aaPredicted RBP2.86□□□□□ -1.95
VPS13D-207ENST00000476169 DCUN1D1Q96GG9 259 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 DIRAS2Q96HU8 199 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 BTF3L4Q96K17 158 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 SIGMAR1Q99720 223 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 TLNRD1Q9H1K6 362 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 UBQLN4Q9NRR5 601 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 LINC00527Q9UJ94 153 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 ZNF223Q9UK11 482 aaPredicted RBP2.86□□□□□ -1.95
VPS13D-207ENST00000476169 ZBED9Q6R2W3 1325 aa2.86□□□□□ -1.95
VPS13D-207ENST00000476169 TNS1Q9HBL0 1735 aaKnown RBP2.85□□□□□ -1.95
VPS13D-207ENST00000476169 TOGARAM1Q9Y4F4 1720 aa2.85□□□□□ -1.95
VPS13D-207ENST00000476169 PIKFYVEQ9Y2I7 2098 aa2.85□□□□□ -1.95
VPS13D-207ENST00000476169 ARGFXA6NJG6 315 aa2.85□□□□□ -1.95
VPS13D-207ENST00000476169 A8MWL6 223 aa2.85□□□□□ -1.95
VPS13D-207ENST00000476169 KLLNB2CW77 178 aa2.85□□□□□ -1.95
VPS13D-207ENST00000476169 OR12D1P0DN82 309 aa2.85□□□□□ -1.95
VPS13D-207ENST00000476169 CD79AP11912 226 aa2.85□□□□□ -1.95
VPS13D-207ENST00000476169 GTF2F2P13984 249 aa2.85□□□□□ -1.95
VPS13D-207ENST00000476169 MSNP26038 577 aaKnown RBP2.85□□□□□ -1.95
VPS13D-207ENST00000476169 CMC4P56277 68 aaPredicted RBP2.85□□□□□ -1.95
VPS13D-207ENST00000476169 SYCNQ0VAF6 134 aa2.85□□□□□ -1.95
VPS13D-207ENST00000476169 PRDX4Q13162 271 aa2.85□□□□□ -1.95
VPS13D-207ENST00000476169 EDDM3AQ14507 147 aa2.85□□□□□ -1.95
VPS13D-207ENST00000476169 LUZP6Q538Z0 58 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms