RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 HBZP02008 142 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 UCP1P25874 307 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 FLI1Q01543 452 aaPredicted RBP11.29□□□□□ -0.6
VPS54-203ENST00000409558 COL10A1Q03692 680 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 DBX2Q6ZNG2 339 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 GALMQ96C23 342 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 RNF122Q9H9V4 155 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 RPRMQ9NS64 109 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 POLDIP2Q9Y2S7 368 aa11.29□□□□□ -0.6
VPS54-203ENST00000409558 OR2C1O95371 312 aa11.28□□□□□ -0.6
VPS54-203ENST00000409558 UCP3P55916 312 aa11.28□□□□□ -0.6
VPS54-203ENST00000409558 SRPXP78539 464 aa11.28□□□□□ -0.6
VPS54-203ENST00000409558 EIF3IQ13347 325 aaKnown RBP11.28□□□□□ -0.6
VPS54-203ENST00000409558 NMSQ5H8A3 153 aa11.28□□□□□ -0.6
VPS54-203ENST00000409558 C17orf98A8MV24 154 aa11.28□□□□□ -0.6
VPS54-203ENST00000409558 RAB5BP61020 215 aa11.28□□□□□ -0.6
VPS54-203ENST00000409558 DHRS7BQ6IAN0 325 aaPredicted RBP11.28□□□□□ -0.6
VPS54-203ENST00000409558 GINS3Q9BRX5 216 aa11.28□□□□□ -0.6
VPS54-203ENST00000409558 EGR1P18146 543 aa11.28□□□□□ -0.6
VPS54-203ENST00000409558 PAX9P55771 341 aa11.28□□□□□ -0.6
VPS54-203ENST00000409558 PRB3Q04118 309 aaPredicted RBP11.28□□□□□ -0.6
VPS54-203ENST00000409558 Q6P435 159 aa11.28□□□□□ -0.6
VPS54-203ENST00000409558 OR13A1Q8NGR1 328 aa11.28□□□□□ -0.6
VPS54-203ENST00000409558 HIST1H2BAQ96A08 127 aa11.28□□□□□ -0.6
VPS54-203ENST00000409558 RPUSD4Q96CM3 377 aaKnown RBP11.28□□□□□ -0.6
VPS54-203ENST00000409558 MRPS18CQ9Y3D5 142 aaKnown RBP11.28□□□□□ -0.6
VPS54-203ENST00000409558 K7EM74 188 aa11.28□□□□□ -0.6
VPS54-203ENST00000409558 LRP5LA4QPB2 252 aa11.27□□□□□ -0.6
VPS54-203ENST00000409558 CTXN2P0C2S0 81 aa11.27□□□□□ -0.6
VPS54-203ENST00000409558 BAXQ07812 192 aa11.27□□□□□ -0.6
VPS54-203ENST00000409558 FABP9Q0Z7S8 132 aa11.27□□□□□ -0.6
VPS54-203ENST00000409558 IL24Q13007 206 aa11.27□□□□□ -0.6
VPS54-203ENST00000409558 ODF3L1Q8IXM7 274 aa11.27□□□□□ -0.6
VPS54-203ENST00000409558 H1FOOQ8IZA3 346 aaPredicted RBP11.27□□□□□ -0.6
VPS54-203ENST00000409558 GMPPAQ96IJ6 420 aaPredicted RBP11.27□□□□□ -0.6
VPS54-203ENST00000409558 TMEM56Q96MV1 263 aa11.27□□□□□ -0.6
VPS54-203ENST00000409558 ZNF71Q9NQZ8 489 aaPredicted RBP11.27□□□□□ -0.6
VPS54-203ENST00000409558 TMEM56-RWDD3S4R434 201 aa11.27□□□□□ -0.6
VPS54-203ENST00000409558 COLCA2A8K830 154 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 H3BQ15 152 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 ZG16O60844 167 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 FCGR3BO75015 233 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 HNF1AP20823 631 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 KIR2DL2P43627 348 aaPredicted RBP11.27□□□□□ -0.61
VPS54-203ENST00000409558 GABRA6Q16445 453 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 PLA2G2CQ5R387 149 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 UTF1Q5T230 341 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 SVEP1Q4LDE5 3571 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 CSMD1Q96PZ7 3565 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 H0Y980 276 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 UBE2G2P60604 165 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 ZNF429Q86V71 674 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 FAM185AQ8N0U4 392 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 OR4C12Q96R67 309 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 TAAR6Q96RI8 345 aa11.27□□□□□ -0.61
VPS54-203ENST00000409558 K7N7A8 449 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 ZNF883P0CG24 379 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 EIF2S3LQ2VIR3 472 aaKnown RBP11.26□□□□□ -0.61
VPS54-203ENST00000409558 ZNF787Q6DD87 383 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 DUX4L9Q6RFH8 374 aaPredicted RBP11.26□□□□□ -0.61
VPS54-203ENST00000409558 GATAD1Q8WUU5 269 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 BIN3Q9NQY0 253 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 SNRPCP09234 159 aaKnown RBP11.26□□□□□ -0.61
VPS54-203ENST00000409558 GNG10P50151 68 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 ID3Q02535 119 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 MOGAT3Q86VF5 341 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 LRTM2Q8N967 370 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 RAB39BQ96DA2 213 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 ZNRD1Q9P1U0 126 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 KLK10O43240 276 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 ZNF585BQ52M93 769 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 SSX7Q7RTT5 188 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 YIF1AO95070 293 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 RAB2AP61019 212 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 DLK1P80370 383 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 TGIF2LYQ8IUE0 185 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 OR5D13Q8NGL4 314 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 ATP5SQ99766 215 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 PLSCR2Q9NRY7 297 aa11.26□□□□□ -0.61
VPS54-203ENST00000409558 NDUFA6P56556 154 aa11.25□□□□□ -0.61
VPS54-203ENST00000409558 ZNF528Q3MIS6 628 aa11.25□□□□□ -0.61
VPS54-203ENST00000409558 RPL39P5Q59GN2 51 aa11.25□□□□□ -0.61
VPS54-203ENST00000409558 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.25□□□□□ -0.61
VPS54-203ENST00000409558 A0A0U1RQK1 487 aa11.25□□□□□ -0.61
VPS54-203ENST00000409558 PITX3O75364 302 aa11.25□□□□□ -0.61
VPS54-203ENST00000409558 ZNF880Q6PDB4 577 aa11.25□□□□□ -0.61
VPS54-203ENST00000409558 LINC00518Q8N0U6 118 aa11.25□□□□□ -0.61
VPS54-203ENST00000409558 HABP2Q14520 560 aaPredicted RBP11.25□□□□□ -0.61
VPS54-203ENST00000409558 SNRNP40Q96DI7 357 aaKnown RBP11.25□□□□□ -0.61
VPS54-203ENST00000409558 DCAF16Q9NXF7 216 aa11.25□□□□□ -0.61
VPS54-203ENST00000409558 TMEM30CPA0ZSE6 113 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 COX5BP10606 129 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 GCSAMLQ5JQS6 135 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 H2BFWTQ7Z2G1 175 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 LHX4Q969G2 390 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 PROCRQ9UNN8 238 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 LRBAP50851 2863 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 TGIF2-C20orf24A0A0A6YYL0 155 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 ZNF98A6NK75 572 aa11.24□□□□□ -0.61
VPS54-203ENST00000409558 M0R1X1 148 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms