RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 CD33P20138 364 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 G0S2P27469 103 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 SRYQ05066 204 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 COLCA1Q6ZS62 124 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 MRPL21Q7Z2W9 205 aaKnown RBP15.63■□□□□ 0.09
CCDC3-201ENST00000378825 MKXQ8IYA7 352 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 AGBL5Q8NDL9 886 aa15.63■□□□□ 0.09
CCDC3-201ENST00000378825 PSMG3Q9BT73 122 aaPredicted RBP15.63■□□□□ 0.09
CCDC3-201ENST00000378825 ACTR3CQ9C0K3 210 aaPredicted RBP15.63■□□□□ 0.09
CCDC3-201ENST00000378825 RBM7Q9Y580 266 aaKnown RBP15.63■□□□□ 0.09
CCDC3-201ENST00000378825 DSPP15924 2871 aaKnown RBP15.63■□□□□ 0.09
CCDC3-201ENST00000378825 PINLYPA6NC86 204 aa15.62■□□□□ 0.09
CCDC3-201ENST00000378825 CHRNA7P36544 502 aa15.62■□□□□ 0.09
CCDC3-201ENST00000378825 SLC38A11Q08AI6 406 aa15.62■□□□□ 0.09
CCDC3-201ENST00000378825 IL11RAQ14626 422 aa15.62■□□□□ 0.09
CCDC3-201ENST00000378825 CEACAM21Q3KPI0 293 aa15.62■□□□□ 0.09
CCDC3-201ENST00000378825 TEX38Q6PEX7 206 aa15.62■□□□□ 0.09
CCDC3-201ENST00000378825 DEPPQ9NTK1 212 aa15.62■□□□□ 0.09
CCDC3-201ENST00000378825 CBLN4Q9NTU7 201 aa15.62■□□□□ 0.09
CCDC3-201ENST00000378825 ZFHX4Q86UP3 3567 aa15.62■□□□□ 0.09
CCDC3-201ENST00000378825 HOXA4Q00056 320 aaPredicted RBP15.62■□□□□ 0.09
CCDC3-201ENST00000378825 SPINK9Q5DT21 86 aa15.62■□□□□ 0.09
CCDC3-201ENST00000378825 PRDM14Q9GZV8 571 aa15.62■□□□□ 0.09
CCDC3-201ENST00000378825 WDR54Q9H977 334 aa15.62■□□□□ 0.09
CCDC3-201ENST00000378825 FAM90A10PA6NDY2 464 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 FAM90A18PA6NE21 464 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 FAM90A16PA6NEW6 464 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 FAM90A20PA6NIJ5 464 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 FAM90A8PA6NJQ4 464 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 FAM90A7PA6NKC0 464 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 FAM90A22PA8MWA6 464 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 FAM90A12PA8MX19 464 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 FAM90A5PA8MXJ8 464 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 FAM90A23PA8MXZ1 464 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 CLDN1O95832 211 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 FAM90A15PP0C7V4 464 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 FAM90A13PP0C7W8 464 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 FAM90A14PP0C7W9 464 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 FAM90A24PP0C7X0 464 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 NPPCP23582 126 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 PCBD1P61457 104 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 TMPRSS7Q7RTY8 843 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 VASH2Q86V25 355 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 NEU1Q99519 415 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 DLL3Q9NYJ7 618 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 TP53TG5Q9Y2B4 290 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 TGOLN2O43493 480 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 NUPR1O60356 82 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 COL8A2P25067 703 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 OTX2P32243 289 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 SERF2P84101 59 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 SNHG12Q9BXW3 62 aa15.61■□□□□ 0.09
CCDC3-201ENST00000378825 PGPEP1LA6NFU8 196 aa15.6■□□□□ 0.09
CCDC3-201ENST00000378825 RAMP3O60896 148 aa15.6■□□□□ 0.09
CCDC3-201ENST00000378825 MLF1P58340 268 aa15.6■□□□□ 0.09
CCDC3-201ENST00000378825 SPCS3P61009 180 aa15.6■□□□□ 0.09
CCDC3-201ENST00000378825 TFF3Q07654 80 aa15.6■□□□□ 0.09
CCDC3-201ENST00000378825 MRPL41Q8IXM3 137 aaKnown RBP15.6■□□□□ 0.09
CCDC3-201ENST00000378825 CLN8Q9UBY8 286 aa15.6■□□□□ 0.09
CCDC3-201ENST00000378825 RNF150Q9ULK6 438 aa15.6■□□□□ 0.09
CCDC3-201ENST00000378825 CTXN2P0C2S0 81 aa15.6■□□□□ 0.09
CCDC3-201ENST00000378825 HBG1P69891 147 aa15.6■□□□□ 0.09
CCDC3-201ENST00000378825 HBG2P69892 147 aa15.6■□□□□ 0.09
CCDC3-201ENST00000378825 SLC10A1Q14973 349 aa15.6■□□□□ 0.09
CCDC3-201ENST00000378825 SRSF7Q16629 238 aaKnown RBP eCLIP15.6■□□□□ 0.09
CCDC3-201ENST00000378825 TECTBQ96PL2 329 aa15.6■□□□□ 0.09
CCDC3-201ENST00000378825 OR5B12Q96R08 314 aa15.6■□□□□ 0.09
CCDC3-201ENST00000378825 GJE1A6NN92 205 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 PAGE4O60829 102 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 CRYAAP02489 173 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 PAX5Q02548 391 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 COA6Q5JTJ3 125 aaKnown RBP15.59■□□□□ 0.09
CCDC3-201ENST00000378825 SPATA46Q5T0L3 261 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 FIP1L1Q6UN15 594 aaKnown RBP15.59■□□□□ 0.09
CCDC3-201ENST00000378825 TMEM256Q8N2U0 113 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 OR2Y1Q8NGV0 311 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 TMEM170AQ8WVE7 144 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 MRPL37Q9BZE1 423 aaKnown RBP15.59■□□□□ 0.09
CCDC3-201ENST00000378825 B4E171 279 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 SIRPB1O00241 398 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 HRASP01112 189 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 IFNA1P01562 189 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 GYPAP02724 150 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 SRD5A2P31213 254 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 WNT5AP41221 380 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 TSPAN7P41732 249 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 LINC00205P59089 165 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 NUTF2P61970 127 aaKnown RBP15.59■□□□□ 0.09
CCDC3-201ENST00000378825 ZXDAP98168 799 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 DERL1Q9BUN8 251 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 Q0VFX4 171 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 FGFRL1Q8N441 504 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 OR51I2Q9H344 312 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 TMEM9BQ9NQ34 198 aa15.59■□□□□ 0.09
CCDC3-201ENST00000378825 KRASP01116 189 aa15.58■□□□□ 0.08
CCDC3-201ENST00000378825 SLC25A6P12236 298 aa15.58■□□□□ 0.08
CCDC3-201ENST00000378825 SELEP16581 610 aa15.58■□□□□ 0.08
CCDC3-201ENST00000378825 S100GP29377 79 aa15.58■□□□□ 0.08
CCDC3-201ENST00000378825 RIPPLY2Q5TAB7 128 aa15.58■□□□□ 0.08
CCDC3-201ENST00000378825 ZDHHC16Q969W1 377 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms