RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 PPP1R3CQ9UQK1 317 aa11.71□□□□□ -0.53
SYNE3-201ENST00000334258 CHTOPQ9Y3Y2 248 aaKnown RBP11.71□□□□□ -0.53
SYNE3-201ENST00000334258 TFPI2P48307 235 aa11.71□□□□□ -0.54
SYNE3-201ENST00000334258 GPM6AP51674 278 aa11.71□□□□□ -0.54
SYNE3-201ENST00000334258 PMP22Q01453 160 aa11.71□□□□□ -0.54
SYNE3-201ENST00000334258 COA6Q5JTJ3 125 aaKnown RBP11.71□□□□□ -0.54
SYNE3-201ENST00000334258 PSMG3Q9BT73 122 aaPredicted RBP11.71□□□□□ -0.54
SYNE3-201ENST00000334258 OCIAD1Q9NX40 245 aa11.71□□□□□ -0.54
SYNE3-201ENST00000334258 KCNS2Q9ULS6 477 aa11.71□□□□□ -0.54
SYNE3-201ENST00000334258 TMEM265A0A087WTH1 108 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 hCG_38984A0A1B0GV85 526 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 CLDN1O95832 211 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 IGHV3-9P01782 118 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 CTXN2P0C2S0 81 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 CNN1P51911 297 aaKnown RBP11.7□□□□□ -0.54
SYNE3-201ENST00000334258 LRRC75BQ2VPJ9 315 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 TMEM42Q69YG0 159 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.7□□□□□ -0.54
SYNE3-201ENST00000334258 RPP25LQ8N5L8 163 aaKnown RBP11.7□□□□□ -0.54
SYNE3-201ENST00000334258 ZIC4Q8N9L1 334 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 GATAD1Q8WUU5 269 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 IGKV1-6A0A0C4DH72 117 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 A0A0U1RQK1 487 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 ZNF320A2RRD8 509 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 CRYABP02511 175 aaKnown RBP11.7□□□□□ -0.54
SYNE3-201ENST00000334258 CLDN15P56746 228 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 FAM78BQ5VT40 261 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 ABLIM2Q6H8Q1 611 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 KCNIP4Q6PIL6 250 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 MYPOPQ86VE0 399 aaPredicted RBP11.7□□□□□ -0.54
SYNE3-201ENST00000334258 UBALD1Q8TB05 177 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 ZNF845Q96IR2 970 aaPredicted RBP11.7□□□□□ -0.54
SYNE3-201ENST00000334258 MS4A10Q96PG2 267 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 PYGO2Q9BRQ0 406 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 CEP250Q9BV73 2442 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 A0A0J9YW62 118 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 GYPAP02724 150 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 CEACAM16Q2WEN9 425 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 FOXL2NBQ6ZUU3 175 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 AAED1Q7RTV5 226 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 IL22RA2Q969J5 263 aa11.7□□□□□ -0.54
SYNE3-201ENST00000334258 WDR61Q9GZS3 305 aaKnown RBP11.7□□□□□ -0.54
SYNE3-201ENST00000334258 CELA2AP08217 269 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 CD46P15529 392 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 WNT5AP41221 380 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 SLC38A11Q08AI6 406 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 MKXQ8IYA7 352 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 ZNF295-AS1Q8N0V1 137 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 FADS6Q8N9I5 356 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 OR56B2PQ8NGI1 322 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 TAF15Q92804 592 aaKnown RBP eCLIP11.69□□□□□ -0.54
SYNE3-201ENST00000334258 TMEM38BQ9NVV0 291 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 OR6C3Q9NZP0 311 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 TRAPPC1Q9Y5R8 145 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 CHCHD2Q9Y6H1 151 aaPredicted RBP11.69□□□□□ -0.54
SYNE3-201ENST00000334258 ATP23Q9Y6H3 246 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 SPENQ96T58 3664 aaKnown RBP11.69□□□□□ -0.54
SYNE3-201ENST00000334258 TRAV39A0A0B4J263 110 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 TRAPPC2LH3BP13 241 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 CIDEAO60543 219 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 BMP5P22003 454 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 MLF1P58340 268 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 RPS16P62249 146 aaKnown RBP11.69□□□□□ -0.54
SYNE3-201ENST00000334258 OR10V1Q8NGI7 309 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 FGFBP3Q8TAT2 258 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 RNF138Q8WVD3 245 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 PSMF1Q92530 271 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 NAGKQ9UJ70 344 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 OR2W1Q9Y3N9 320 aa11.69□□□□□ -0.54
SYNE3-201ENST00000334258 A0A1B0GUS0 222 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 OR6C6A6NF89 314 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 TUSC2O75896 110 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 CD33P20138 364 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 S100A7AQ86SG5 101 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 SDSLQ96GA7 329 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 TBX15Q96SF7 602 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 FOXB1Q99853 325 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 GAL3ST2Q9H3Q3 398 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 C19orf25Q9UFG5 118 aaPredicted RBP11.68□□□□□ -0.54
SYNE3-201ENST00000334258 ITGB1BP1O14713 200 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 PAGE4O60829 102 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 WDR1O75083 606 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 NAPSAO96009 420 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 CCL4P13236 92 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 EPHA8P29322 1005 aaPredicted RBP11.68□□□□□ -0.54
SYNE3-201ENST00000334258 C9orf135Q5VTT2 229 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 HAPLN4Q86UW8 402 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 TMEM256Q8N2U0 113 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 ANAPC16Q96DE5 110 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 CLUHP3Q96NS8 147 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 SRXN1Q9BYN0 137 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 OR2H1Q9GZK4 316 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 LPAR2Q9HBW0 351 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 IGKV1D-33P01593 117 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 IGKV1-33P01594 117 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 IGHEP01854 428 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 CCL3P10147 92 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 HOXC12P31275 282 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 ACTL10Q5JWF8 245 aa11.68□□□□□ -0.54
SYNE3-201ENST00000334258 ZDHHC23Q8IYP9 409 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 148 ms