RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 WNT1P04628 370 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 ISG15P05161 165 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 NRLP54845 237 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 UCP2P55851 309 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 ZNF324BQ6AW86 544 aaPredicted RBP4.26□□□□□ -1.73
CSMD3-201ENST00000297405 SMIM20Q8N5G0 67 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 RHOVQ96L33 236 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 CHTOPQ9Y3Y2 248 aaKnown RBP4.26□□□□□ -1.73
CSMD3-201ENST00000297405 SNED1Q8TER0 1413 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 FXYD1O00168 92 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 CDC42EP2O14613 210 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 AVPR2P30518 371 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 FOXA1P55317 472 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 LRRC10Q5BKY1 277 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 ORMDL3Q8N138 153 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 TMEM178AQ8NBL3 297 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 TMEFF2Q9UIK5 374 aaPredicted RBP4.26□□□□□ -1.73
CSMD3-201ENST00000297405 UFC1Q9Y3C8 167 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 A0A1B0GUT8 65 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 EFNB2P52799 333 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 ACSM5Q6NUN0 579 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 OR11H7Q8NGC8 314 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 MEGF9Q9H1U4 602 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 LRP5O75197 1615 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 DDTLA6NHG4 134 aaPredicted RBP4.26□□□□□ -1.73
CSMD3-201ENST00000297405 ERVH48-1M5A8F1 160 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 ZNF735P0CB33 412 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 FSTP19883 344 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 ATP6V0CP27449 155 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 CD68P34810 354 aaPredicted RBP4.26□□□□□ -1.73
CSMD3-201ENST00000297405 RASL11BQ9BPW5 248 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 SCNM1Q9BWG6 230 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 GDF6Q6KF10 455 aaPredicted RBP4.26□□□□□ -1.73
CSMD3-201ENST00000297405 YBX2Q9Y2T7 364 aaKnown RBP4.26□□□□□ -1.73
CSMD3-201ENST00000297405 ZFHX2Q9C0A1 2572 aaPredicted RBP4.26□□□□□ -1.73
CSMD3-201ENST00000297405 NPIPB13A6NJU9 1138 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 NPIPB4C9JG80 1138 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 TMPRSS11DO60235 418 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 PSG9Q00887 426 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 WDR25Q64LD2 544 aaPredicted RBP4.26□□□□□ -1.73
CSMD3-201ENST00000297405 DOK4Q8TEW6 326 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 CPAMD8Q8IZJ3 1885 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 POLR2IP36954 125 aaKnown RBP4.26□□□□□ -1.73
CSMD3-201ENST00000297405 ACVRL1P37023 503 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 FGFBP2Q9BYJ0 223 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 ZNF355PQ9NSJ1 428 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 A0A0U1RQV5 110 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 F13BP05160 661 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 FAM189BP81408 668 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 ZNF880Q6PDB4 577 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 MED25Q71SY5 747 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 CMTM8Q8IZV2 173 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 MED20Q9H944 212 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 MPC1Q9Y5U8 109 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 A0A087WUJ7 227 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 TRAV8-4A0A0B4J246 113 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 A0A0G2JLM5 398 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 NKX2-6A6NCS4 301 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 JMJD7P0C870 316 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 PCBP3P57721 371 aaKnown RBP4.26□□□□□ -1.73
CSMD3-201ENST00000297405 LY75O60449 1722 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 PPYP01298 95 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 SPNP16150 400 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 FOXL1Q12952 345 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 GAGE5Q13069 117 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 GAGE6Q13070 117 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 TMEM95Q3KNT9 176 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 C10orf113Q5VZT2 155 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 USP24Q9UPU5 2620 aa4.26□□□□□ -1.73
CSMD3-201ENST00000297405 GGTLC3B5MD39 225 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 GZMHP20718 246 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 DPTQ07507 201 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 CEACAM16Q2WEN9 425 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 ORMDL2Q53FV1 153 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 PYY3Q5JQD4 70 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 GCSAMLQ5JQS6 135 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 RNF182Q8N6D2 247 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 ZNF502Q8TBZ5 544 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 PIAS3Q9Y6X2 628 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 THSD7AQ9UPZ6 1657 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 ZNF324O75467 553 aaPredicted RBP4.25□□□□□ -1.73
CSMD3-201ENST00000297405 PRR35P0CG20 571 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 FAM181AQ8N9Y4 354 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 INSL5Q9Y5Q6 135 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 GFYI3L273 518 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 SELENOHQ8IZQ5 122 aaKnown RBP4.25□□□□□ -1.73
CSMD3-201ENST00000297405 TMEM255BQ8WV15 326 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 TMEM170AQ8WVE7 144 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 HDHD3Q9BSH5 251 aaPredicted RBP4.25□□□□□ -1.73
CSMD3-201ENST00000297405 OBP2AQ9NY56 170 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 ZNF840PA6NDX5 716 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 J3KT08 172 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 HIST1H2BKO60814 126 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 HIST1H2BJP06899 126 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 PRSS2P07478 247 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 HIST1H2BOP23527 126 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 HIST1H2BBP33778 126 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 HIST1H2BDP58876 126 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 HIST1H2BCP62807 126 aa4.25□□□□□ -1.73
CSMD3-201ENST00000297405 HIST2H2BEQ16778 126 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms