RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 YPEL3P61236 119 aaPredicted RBP8.78□□□□□ -1
VPS39-214ENST00000614932 C16orf47Q6ZP98 133 aaPredicted RBP8.78□□□□□ -1
VPS39-214ENST00000614932 LGI3Q8N145 548 aa8.78□□□□□ -1
VPS39-214ENST00000614932 WNT10AQ9GZT5 417 aa8.78□□□□□ -1
VPS39-214ENST00000614932 ZNF205O95201 554 aa8.78□□□□□ -1
VPS39-214ENST00000614932 WISP1O95388 367 aa8.78□□□□□ -1
VPS39-214ENST00000614932 IFNA1P01562 189 aa8.78□□□□□ -1
VPS39-214ENST00000614932 IGLV3-19P01714 112 aa8.78□□□□□ -1
VPS39-214ENST00000614932 LIPFP07098 398 aa8.78□□□□□ -1
VPS39-214ENST00000614932 CDKN2AP42771 156 aaKnown RBP8.78□□□□□ -1
VPS39-214ENST00000614932 PPP1CBP62140 327 aa8.78□□□□□ -1
VPS39-214ENST00000614932 UNC119Q13432 240 aa8.78□□□□□ -1
VPS39-214ENST00000614932 MPV17L2Q567V2 206 aa8.78□□□□□ -1
VPS39-214ENST00000614932 TCTEX1D4Q5JR98 221 aa8.78□□□□□ -1
VPS39-214ENST00000614932 NEGR1Q7Z3B1 354 aa8.78□□□□□ -1
VPS39-214ENST00000614932 TSSK2Q96PF2 358 aa8.78□□□□□ -1
VPS39-214ENST00000614932 TSPAN32Q96QS1 320 aa8.78□□□□□ -1
VPS39-214ENST00000614932 REPIN1Q9BWE0 567 aaKnown RBP8.78□□□□□ -1
VPS39-214ENST00000614932 RTN4RQ9BZR6 473 aa8.78□□□□□ -1
VPS39-214ENST00000614932 NXF5Q9H1B4 397 aaKnown RBP8.78□□□□□ -1
VPS39-214ENST00000614932 NRN1Q9NPD7 142 aa8.78□□□□□ -1
VPS39-214ENST00000614932 PLEKHJ1Q9NW61 149 aa8.78□□□□□ -1
VPS39-214ENST00000614932 CACNA1CQ13936 2221 aa8.78□□□□□ -1
VPS39-214ENST00000614932 TRAV8-6A0A0B4J262 113 aa8.77□□□□□ -1
VPS39-214ENST00000614932 FAM24AA6NFZ4 105 aa8.77□□□□□ -1
VPS39-214ENST00000614932 H7C1C5 153 aa8.77□□□□□ -1
VPS39-214ENST00000614932 SDCBPO00560 298 aaPredicted RBP8.77□□□□□ -1
VPS39-214ENST00000614932 SMIM17P0DL12 118 aa8.77□□□□□ -1
VPS39-214ENST00000614932 AMY2BP19961 511 aa8.77□□□□□ -1
VPS39-214ENST00000614932 DUSP1P28562 367 aa8.77□□□□□ -1
VPS39-214ENST00000614932 ZNF83P51522 516 aa8.77□□□□□ -1
VPS39-214ENST00000614932 RUNX1Q01196 453 aa8.77□□□□□ -1
VPS39-214ENST00000614932 CFHR1Q03591 330 aa8.77□□□□□ -1
VPS39-214ENST00000614932 SPIN3Q5JUX0 258 aa8.77□□□□□ -1
VPS39-214ENST00000614932 OR52M1Q8NGK5 317 aa8.77□□□□□ -1
VPS39-214ENST00000614932 KLHL13Q9P2N7 655 aa8.77□□□□□ -1
VPS39-214ENST00000614932 SLC22A13Q9Y226 551 aa8.77□□□□□ -1
VPS39-214ENST00000614932 EML5Q05BV3 1969 aa8.77□□□□□ -1.01
VPS39-214ENST00000614932 C2orf72A6NCS6 295 aa8.77□□□□□ -1.01
VPS39-214ENST00000614932 M0R1X1 148 aa8.77□□□□□ -1.01
VPS39-214ENST00000614932 ARPC3O15145 178 aa8.77□□□□□ -1.01
VPS39-214ENST00000614932 RPS27P42677 84 aaKnown RBP8.77□□□□□ -1.01
VPS39-214ENST00000614932 FASLGP48023 281 aa8.77□□□□□ -1.01
VPS39-214ENST00000614932 DNASE1L1P49184 302 aa8.77□□□□□ -1.01
VPS39-214ENST00000614932 RTN4RL2Q86UN3 420 aa8.77□□□□□ -1.01
VPS39-214ENST00000614932 MTURNQ8N3F0 131 aa8.77□□□□□ -1.01
VPS39-214ENST00000614932 TMEM171Q8WVE6 324 aa8.77□□□□□ -1.01
VPS39-214ENST00000614932 EAF1Q96JC9 268 aaPredicted RBP8.77□□□□□ -1.01
VPS39-214ENST00000614932 IGSF23A1L1A6 192 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 CRYM-AS1A6NIL9 109 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 NUDT14O95848 222 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 CSNK2A1P68400 391 aaPredicted RBP8.76□□□□□ -1.01
VPS39-214ENST00000614932 ZNF154Q13106 437 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 PMCHL1Q16048 86 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 ZNF74Q16587 644 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 GTF2H5Q6ZYL4 71 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 SULF2Q8IWU5 870 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 CSNK2A3Q8NEV1 391 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 OR1L3Q8NH93 324 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 LIN37Q96GY3 246 aaPredicted RBP8.76□□□□□ -1.01
VPS39-214ENST00000614932 NUDT22Q9BRQ3 303 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 LMF2Q9BU23 707 aaKnown RBP8.76□□□□□ -1.01
VPS39-214ENST00000614932 RBM24Q9BX46 236 aaKnown RBP8.76□□□□□ -1.01
VPS39-214ENST00000614932 WDR76Q9H967 626 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 PRDM6Q9NQX0 595 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 WASHC3Q9Y3C0 194 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 MPDZO75970 2070 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 C10orf142B7Z368 130 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 CD5LO43866 347 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 GYPAP02724 150 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 CLEC3BP05452 202 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 TIMP3P35625 211 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 Q0VG73 95 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 BVES-AS1Q5T3Y7 98 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 FAM69BQ5VUD6 431 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 UFSP1Q6NVU6 142 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 LCN15Q6UWW0 184 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 TCF23Q7RTU1 214 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 DERL1Q9BUN8 251 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 MOB1AQ9H8S9 216 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 PLA2G3Q9NZ20 509 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 TMEM14AQ9Y6G1 99 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 K7EQM0 130 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 P2RY10O00398 339 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 TSPAN13O95857 204 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 OMGP23515 440 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 TAS2R46P59540 309 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 FOXL1Q12952 345 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 SRSF7Q16629 238 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS39-214ENST00000614932 STUMQ69YW2 141 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 LYPD6Q86Y78 171 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 SLC25A45Q8N413 288 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 OR5C1Q8NGR4 320 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 MBD3L1Q8WWY6 194 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 CACNG8Q8WXS5 425 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 SIGLEC12Q96PQ1 595 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 PLEKHF2Q9H8W4 249 aa8.76□□□□□ -1.01
VPS39-214ENST00000614932 LMO7DNF2Z398 122 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 KLRC4-KLRK1H3BQV0 150 aa8.75□□□□□ -1.01
VPS39-214ENST00000614932 SIRPB1O00241 398 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms