RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CHD3Q12873 2000 aaKnown RBP14.89□□□□□ -0.03
SYNE3-202ENST00000553340 UBE2L5PA0A1B0GUS4 154 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 MKRN2OSH3BPM6 223 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 IGLV2-14P01704 120 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 AMBPP02760 352 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 RNF224P0DH78 156 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 CCL4P13236 92 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 PAX1P15863 534 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 LYSMD4Q5XG99 296 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 ZNF573Q86YE8 665 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 OR5P3Q8WZ94 311 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 PRRG4Q9BZD6 226 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 LINC00470Q9BZP3 86 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 TMEM9BQ9NQ34 198 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 PRDM6Q9NQX0 595 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 PPP5D1E7EU14 171 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP14.89□□□□□ -0.03
SYNE3-202ENST00000553340 SLC31A2O15432 143 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 GZMBP10144 247 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 TUBG1P23258 451 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 CXCL12P48061 93 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 SLC38A11Q08AI6 406 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 RPP25LQ8N5L8 163 aaKnown RBP14.89□□□□□ -0.03
SYNE3-202ENST00000553340 NECAP1Q8NC96 275 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 OR1K1Q8NGR3 316 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 MRPS18CQ9Y3D5 142 aaKnown RBP14.89□□□□□ -0.03
SYNE3-202ENST00000553340 TIMM9Q9Y5J7 89 aa14.89□□□□□ -0.03
SYNE3-202ENST00000553340 H7BYZ3 331 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 NGFP01138 241 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 GALR1P47211 349 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 PSMB3P49720 205 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 ZNF585BQ52M93 769 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 DBX2Q6ZNG2 339 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 OR51G1Q8NGK1 321 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 RPUSD4Q96CM3 377 aaKnown RBP14.88□□□□□ -0.03
SYNE3-202ENST00000553340 STRADBQ9C0K7 418 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 SMOC1Q9H4F8 434 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 KCNS2Q9ULS6 477 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 ANKRD30BLA7E2S9 258 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 TMEM250H0YL14 139 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 K7ESF4 209 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 GFRA1P56159 465 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 TAS2R60P59551 318 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 RPL23P62829 140 aaKnown RBP14.88□□□□□ -0.03
SYNE3-202ENST00000553340 TESK1Q15569 626 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 HLA-BQ31612 363 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 LBHQ53QV2 105 aaPredicted RBP14.88□□□□□ -0.03
SYNE3-202ENST00000553340 COA6Q5JTJ3 125 aaKnown RBP14.88□□□□□ -0.03
SYNE3-202ENST00000553340 ACTR3CQ9C0K3 210 aaPredicted RBP14.88□□□□□ -0.03
SYNE3-202ENST00000553340 DEPPQ9NTK1 212 aa14.88□□□□□ -0.03
SYNE3-202ENST00000553340 IGKV3D-15A0A087WSY6 115 aa14.87□□□□□ -0.03
SYNE3-202ENST00000553340 XKRY2A2RUG3 117 aa14.87□□□□□ -0.03
SYNE3-202ENST00000553340 OR5B21A6NL26 309 aa14.87□□□□□ -0.03
SYNE3-202ENST00000553340 SS18L1O75177 396 aaPredicted RBP14.87□□□□□ -0.03
SYNE3-202ENST00000553340 GNG3P63215 75 aa14.87□□□□□ -0.03
SYNE3-202ENST00000553340 PRR18Q8N4B5 295 aa14.87□□□□□ -0.03
SYNE3-202ENST00000553340 FAM90A26D6RGX4 464 aa14.87□□□□□ -0.03
SYNE3-202ENST00000553340 IGKV1D-33P01593 117 aa14.87□□□□□ -0.03
SYNE3-202ENST00000553340 IGKV1-33P01594 117 aa14.87□□□□□ -0.03
SYNE3-202ENST00000553340 ERVS71-1P61550 626 aa14.87□□□□□ -0.03
SYNE3-202ENST00000553340 OR8G2PQ6IF36 304 aa14.87□□□□□ -0.03
SYNE3-202ENST00000553340 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.87□□□□□ -0.03
SYNE3-202ENST00000553340 RYDENQ9NUL5 291 aaKnown RBP14.87□□□□□ -0.03
SYNE3-202ENST00000553340 ARGFXA6NJG6 315 aa14.86□□□□□ -0.03
SYNE3-202ENST00000553340 ZNF66Q6ZN08 573 aa14.86□□□□□ -0.03
SYNE3-202ENST00000553340 MOB1BQ7L9L4 216 aa14.86□□□□□ -0.03
SYNE3-202ENST00000553340 CENPVQ7Z7K6 275 aaPredicted RBP14.86□□□□□ -0.03
SYNE3-202ENST00000553340 ACY3Q96HD9 319 aa14.86□□□□□ -0.03
SYNE3-202ENST00000553340 MPC1Q9Y5U8 109 aa14.86□□□□□ -0.03
SYNE3-202ENST00000553340 WDR1O75083 606 aa14.86□□□□□ -0.03
SYNE3-202ENST00000553340 SPINK2P20155 84 aa14.86□□□□□ -0.03
SYNE3-202ENST00000553340 FAM3BP58499 235 aaPredicted RBP14.86□□□□□ -0.03
SYNE3-202ENST00000553340 Q3ZCU0 254 aa14.86□□□□□ -0.03
SYNE3-202ENST00000553340 RAB24Q969Q5 203 aa14.86□□□□□ -0.03
SYNE3-202ENST00000553340 NOL4LQ96MY1 436 aaPredicted RBP14.86□□□□□ -0.03
SYNE3-202ENST00000553340 PARLQ9H300 379 aa14.86□□□□□ -0.03
SYNE3-202ENST00000553340 TRAV39A0A0B4J263 110 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 ZNF503-AS2A6NEH8 195 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 A8MWP6 167 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 CLDN1O95832 211 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 IGHEP01854 428 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 FOSL1P15407 271 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 GZMHP20718 246 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 Q0VFX4 171 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 TMEM14EPQ6UXP3 125 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 CTXND1A0A1B0GTU2 59 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 C3orf80F5H4A9 247 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 HRASP01112 189 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 GCGP01275 180 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 OTX2P32243 289 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 APLNRP35414 380 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 ARR3P36575 388 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 IDH3GP51553 393 aaPredicted RBP14.85□□□□□ -0.03
SYNE3-202ENST00000553340 FOXG1P55316 489 aaPredicted RBP14.85□□□□□ -0.03
SYNE3-202ENST00000553340 SRYQ05066 204 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 FGFRL1Q8N441 504 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 POM121L2Q96KW2 1035 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 C2orf88Q9BSF0 95 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 PKIBQ9C010 78 aa14.85□□□□□ -0.03
SYNE3-202ENST00000553340 OR51I2Q9H344 312 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 116.7 ms