RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 GAPTQ8N292 157 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 ADPRHL1Q8NDY3 354 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 OR10G3Q8NGC4 313 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 U3KQA8 63 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 PCSK5Q92824 1860 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 DMXL2Q8TDJ6 3036 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 TRBV5-7A0A0A0MS05 114 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 GRIFINA4D1Z8 144 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 C5orf49A4QMS7 147 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 C9JQL5 133 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 PAGE4O60829 102 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 HSBP1O75506 76 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 ZNF17P17021 662 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 FUT3P21217 361 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 DTYMKP23919 212 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 GPX4P36969 197 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-203ENST00000547825 RPS23P62266 143 aaKnown RBP4.73□□□□□ -1.65
LIMA1-203ENST00000547825 FFAR4Q5NUL3 377 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 ASPHD2Q6ICH7 369 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 BTNL8Q6UX41 500 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 C1QL2Q7Z5L3 287 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 OR10AD1Q8NGE0 317 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 ACTR3CQ9C0K3 210 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-203ENST00000547825 SELENOKQ9Y6D0 94 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 ZFHX3Q15911 3703 aa4.73□□□□□ -1.65
LIMA1-203ENST00000547825 MUC6Q6W4X9 2439 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 RELNP78509 3460 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 IGKV1D-42A0A075B6H8 117 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 TLCD2A6NGC4 264 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 C5orf52A6NGY3 159 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 HSPB2A8KAH6 182 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 DEFB108AA8MXU0 73 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 FOXS1O43638 330 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 CXCL13O43927 109 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 OR7C2O60412 319 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 DEDDO75618 318 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 CTSDP07339 412 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-203ENST00000547825 OR8U8P0C7N1 319 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 COX5AP20674 150 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 ARL3P36405 182 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 THBS3P49746 956 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 YPEL5P62699 121 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 CCL20P78556 96 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 FAM3AP98173 230 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 UNC119Q13432 240 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 GGTLC2Q14390 218 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 HSPB2Q16082 182 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 H2BFWTQ7Z2G1 175 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 C11orf42Q8N5U0 333 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 TMEM252Q8N6L7 170 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 AQP10Q96PS8 301 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 KIR2DS1A0A191URI9 304 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 LRP5LA4QPB2 252 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 NPIPB9F8W1W9 429 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 MPPED1O15442 326 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 MT-CO2P00403 227 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 SOD3P08294 240 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 CRISP2P16562 243 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 APLNRP35414 380 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 KIR2DS4P43632 304 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 TPPP2P59282 170 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 RPP30P78346 268 aaKnown RBP4.72□□□□□ -1.65
LIMA1-203ENST00000547825 IL13RA2Q14627 380 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 KIR2DS1Q14954 304 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 C16orf82Q7Z2V1 217 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 ATOH7Q8N100 152 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 CMTM2Q8TAZ6 248 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 Q8WTZ3 238 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 ZNF764Q96H86 408 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-203ENST00000547825 ZNF331Q9NQX6 463 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-203ENST00000547825 SLC7A10Q9NS82 523 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 ABI3Q9P2A4 366 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 FRG2CA6NGY1 282 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 ZNF732B4DXR9 585 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 TNFSF11O14788 317 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 NDUFA2O43678 99 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 PPYP01298 95 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 ASAH2BP0C7U1 165 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 UBE2NP61088 152 aaKnown RBP4.72□□□□□ -1.65
LIMA1-203ENST00000547825 CTAG1AP78358 180 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 SLC38A11Q08AI6 406 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 CEACAM16Q2WEN9 425 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 PRR31Q5SQ13 230 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 SLC25A43Q8WUT9 341 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-203ENST00000547825 MRGPRFQ96AM1 343 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 FAM122AQ96E09 287 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 CDH20Q9HBT6 801 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 PILRAQ9UKJ1 303 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 NOSIPQ9Y314 301 aaKnown RBP4.72□□□□□ -1.65
LIMA1-203ENST00000547825 MMACHCQ9Y4U1 282 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 ZNF407Q9C0G0 2248 aa4.72□□□□□ -1.65
LIMA1-203ENST00000547825 SVEP1Q4LDE5 3571 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 A0A1B0GX78 115 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 MBD3L4A6NDZ8 208 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-203ENST00000547825 MBD3L3A6NE82 208 aaPredicted RBP4.71□□□□□ -1.65
LIMA1-203ENST00000547825 C17orf112F2Z3M2 114 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 LAMTOR5O43504 91 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 DHRS3O75911 302 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 HOXA5P20719 270 aa4.71□□□□□ -1.65
LIMA1-203ENST00000547825 HINT1P49773 126 aaPredicted RBP4.71□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 205.6 ms