RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CLPSP04118 112 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 GLRA1P23415 457 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 CTRLP40313 264 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 MDH2P40926 338 aaKnown RBP4.52□□□□□ -1.69
USP28-213ENST00000544967 GALR1P47211 349 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 SNU13P55769 128 aaKnown RBP4.52□□□□□ -1.69
USP28-213ENST00000544967 ZP4Q12836 540 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 ZNF705AQ6ZN79 300 aaPredicted RBP4.52□□□□□ -1.69
USP28-213ENST00000544967 CA13Q8N1Q1 262 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 SPSB1Q96BD6 273 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 MSI2Q96DH6 328 aaKnown RBP4.52□□□□□ -1.69
USP28-213ENST00000544967 TMEM56Q96MV1 263 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 MS4A10Q96PG2 267 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 TP53RKQ96S44 253 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 AMELYQ99218 206 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 OR10A2Q9H208 303 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 FAM206AQ9NX38 181 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 RCL1Q9Y2P8 373 aaKnown RBP4.52□□□□□ -1.69
USP28-213ENST00000544967 WIPI2Q9Y4P8 454 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 PXMP4Q9Y6I8 212 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 URGCP-MRPS24S4R325 110 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 TMEM56-RWDD3S4R434 201 aa4.52□□□□□ -1.69
USP28-213ENST00000544967 NPIPA2E9PIF3 369 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 H7BYZ3 331 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 SCDO00767 359 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 TCF21O43680 179 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 PVRP15151 417 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 ZNF93P35789 620 aaPredicted RBP4.51□□□□□ -1.69
USP28-213ENST00000544967 ELLP55199 621 aaPredicted RBP4.51□□□□□ -1.69
USP28-213ENST00000544967 GFRA1P56159 465 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 TMEM50BP56557 158 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 CSNK2A1P68400 391 aaPredicted RBP4.51□□□□□ -1.69
USP28-213ENST00000544967 BTN3A2P78410 334 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 COX19Q49B96 90 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 SLC22A6Q4U2R8 563 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 LCN10Q6JVE6 187 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 IGFL3Q6UXB1 125 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 CMTM1Q8IZ96 169 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 KLHDC1Q8N7A1 406 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 ZNF738Q8NE65 137 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 NFAM1Q8NET5 270 aaPredicted RBP4.51□□□□□ -1.69
USP28-213ENST00000544967 CSNK2A3Q8NEV1 391 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 OR2T10Q8NGZ9 312 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 CT55Q8WUE5 264 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 VSTM2LQ96N03 204 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 TBX15Q96SF7 602 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 RNF2Q99496 336 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 SMIM3Q9BZL3 60 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 OR51I2Q9H344 312 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 ST3GAL6Q9Y274 331 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 MRPS28Q9Y2Q9 187 aaKnown RBP4.51□□□□□ -1.69
USP28-213ENST00000544967 SCN3AQ9NY46 2000 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 TRAV36DV7A0A075B6V5 113 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 TRBV9A0A0B4J1U6 114 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 LOC101059948A0A1B0GTJ6 334 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 OR6A2O95222 327 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 PTTG1IPP53801 180 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 MLF1P58340 268 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 Q0VG73 95 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 FOXC1Q12948 553 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 CD226Q15762 336 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 BSXQ3C1V8 233 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 PCSK4Q6UW60 755 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 Q6ZS49 121 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 C16orf82Q7Z2V1 217 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 SPACA3Q8IXA5 215 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 WDYHV1Q96HA8 205 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 IMMP1LQ96LU5 166 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 KLHDC3Q9BQ90 382 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 TXNDC17Q9BRA2 123 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 VAMP8Q9BV40 100 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 CALHM2Q9HA72 323 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 MANBALQ9NQG1 85 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 PRSS50Q9UI38 385 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 CEP250Q9BV73 2442 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 FRYQ5TBA9 3013 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 A0A0G2JN53 185 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 A0A1W2PRX2 142 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 TMPRSS2O15393 492 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 DBHP09172 617 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 C1QTNF9P0C862 333 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 SCGB1A1P11684 91 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 LIFP15018 202 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 IL12BP29460 328 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 MFAP4P55083 255 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 RAB11AP62491 216 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 ENDOGQ14249 297 aaKnown RBP4.51□□□□□ -1.69
USP28-213ENST00000544967 LINC01559Q495D7 138 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 MBNL2Q5VZF2 373 aaKnown RBP4.51□□□□□ -1.69
USP28-213ENST00000544967 PLCXD3Q63HM9 321 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 ABHD12BQ7Z5M8 362 aaPredicted RBP4.51□□□□□ -1.69
USP28-213ENST00000544967 PPP1R32Q7Z5V6 425 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 TMEM252Q8N6L7 170 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 ZNF441Q8N8Z8 693 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 JSRP1Q96MG2 331 aaPredicted RBP4.51□□□□□ -1.69
USP28-213ENST00000544967 TAAR6Q96RI8 345 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 CSTL1Q9H114 145 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 NECAP2Q9NVZ3 263 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 LAMP3Q9UQV4 416 aa4.51□□□□□ -1.69
USP28-213ENST00000544967 COX11Q9Y6N1 276 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms