RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 VEGFCP49767 419 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 LINC00205P59089 165 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 HTD2P86397 168 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 LSAMPQ13449 338 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 RAB11BQ15907 218 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 PDLIM3Q53GG5 364 aaPredicted RBP8.4□□□□□ -1.06
CD44-227ENST00000528086 LY6G6FQ5SQ64 297 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 STEAP3Q658P3 488 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 ETV3LQ6ZN32 361 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 ZNF833PQ6ZTB9 187 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 ZNF554Q86TJ5 538 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 FAM71E2Q8N5Q1 922 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 NEDD4LQ96PU5 975 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 YPEL2Q96QA6 119 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 NABP2Q9BQ15 211 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 HSPB9Q9BQS6 159 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 PECRQ9BY49 303 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 MRPL20Q9BYC9 149 aaKnown RBP8.4□□□□□ -1.06
CD44-227ENST00000528086 RNF167Q9H6Y7 350 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 OR1A1Q9P1Q5 309 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 GNG12Q9UBI6 72 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 ELF5Q9UKW6 265 aaPredicted RBP8.4□□□□□ -1.06
CD44-227ENST00000528086 HSF4Q9ULV5 492 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 V9GY05 133 aa8.4□□□□□ -1.06
CD44-227ENST00000528086 A0A1W2PRX2 142 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 IFITM5A6NNB3 132 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 ARL6IP5O75915 188 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 SCTP09683 121 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 SLC2A2P11168 524 aaPredicted RBP8.39□□□□□ -1.07
CD44-227ENST00000528086 CFHR3Q02985 330 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 HES1Q14469 280 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 OXLD1Q5BKU9 147 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 C9orf152Q5JTZ5 239 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 C22orf42Q6IC83 251 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 TRAT1Q6PIZ9 186 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 WFDC9Q8NEX5 89 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 C5orf30Q96GV9 206 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 ABHD14AQ9BUJ0 271 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 PLGRKTQ9HBL7 147 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 Q9N2K0 584 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 JPT1Q9UK76 154 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 LRRC42Q9Y546 428 aa8.39□□□□□ -1.07
CD44-227ENST00000528086 IGKV1D-8A0A087WSZ0 117 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 SAA2-SAA4A0A096LPE2 208 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 M0QZK8 103 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 MFNGO00587 321 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 ST8SIA5O15466 376 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 MRPS14O60783 128 aaKnown RBP8.38□□□□□ -1.07
CD44-227ENST00000528086 PRB2P02812 416 aaPredicted RBP8.38□□□□□ -1.07
CD44-227ENST00000528086 CD3GP09693 182 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 CLEC2LP0C7M8 214 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 SAA2P0DJI9 122 aaPredicted RBP8.38□□□□□ -1.07
CD44-227ENST00000528086 CT45A6P0DMU7 189 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 CT45A5P0DMU8 189 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 CT45A7P0DMV0 189 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 FGF9P31371 208 aaPredicted RBP8.38□□□□□ -1.07
CD44-227ENST00000528086 GPR12P47775 334 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 ARHGDIBP52566 201 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 TMEM30BQ3MIR4 351 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 RPL39P5Q59GN2 51 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 LCNL1Q6ZST4 164 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 CENPVQ7Z7K6 275 aaPredicted RBP8.38□□□□□ -1.07
CD44-227ENST00000528086 TGIF2LXQ8IUE1 241 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 DTX3Q8N9I9 347 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 OR2T10Q8NGZ9 312 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 R3HDM4Q96D70 268 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 AKR1E2Q96JD6 320 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 S1PR3Q99500 378 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 C11orf54Q9H0W9 315 aaPredicted RBP8.38□□□□□ -1.07
CD44-227ENST00000528086 ABCG5Q9H222 651 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 OR51E2Q9H255 320 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 PLEKHJ1Q9NW61 149 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 TXNL4BQ9NX01 149 aaKnown RBP8.38□□□□□ -1.07
CD44-227ENST00000528086 STEAP1Q9UHE8 339 aa8.38□□□□□ -1.07
CD44-227ENST00000528086 TNCP24821 2201 aa8.37□□□□□ -1.07
CD44-227ENST00000528086 MOSP00540 346 aa8.37□□□□□ -1.07
CD44-227ENST00000528086 GALP22466 123 aa8.37□□□□□ -1.07
CD44-227ENST00000528086 HLA-DRB3P79483 266 aa8.37□□□□□ -1.07
CD44-227ENST00000528086 ZNF773Q6PK81 442 aa8.37□□□□□ -1.07
CD44-227ENST00000528086 STPG2Q8N412 459 aa8.37□□□□□ -1.07
CD44-227ENST00000528086 IL1F10Q8WWZ1 152 aa8.37□□□□□ -1.07
CD44-227ENST00000528086 GALMQ96C23 342 aa8.37□□□□□ -1.07
CD44-227ENST00000528086 ABHD14BQ96IU4 210 aa8.37□□□□□ -1.07
CD44-227ENST00000528086 YTHDF1Q9BYJ9 559 aaKnown RBP8.37□□□□□ -1.07
CD44-227ENST00000528086 KCNIP1Q9NZI2 227 aa8.37□□□□□ -1.07
CD44-227ENST00000528086 ZNF107Q9UII5 783 aaPredicted RBP8.37□□□□□ -1.07
CD44-227ENST00000528086 RAB22AQ9UL26 194 aa8.37□□□□□ -1.07
CD44-227ENST00000528086 BLOC1S6Q9UL45 172 aa8.37□□□□□ -1.07
CD44-227ENST00000528086 RRP15Q9Y3B9 282 aaKnown RBP8.37□□□□□ -1.07
CD44-227ENST00000528086 TCRBV4S1A1TA0A5B7 111 aa8.36□□□□□ -1.07
CD44-227ENST00000528086 PSMB11A5LHX3 300 aa8.36□□□□□ -1.07
CD44-227ENST00000528086 GNB3P16520 340 aa8.36□□□□□ -1.07
CD44-227ENST00000528086 PSMB9P28065 219 aa8.36□□□□□ -1.07
CD44-227ENST00000528086 NDPQ00604 133 aa8.36□□□□□ -1.07
CD44-227ENST00000528086 KIAA0141Q14154 515 aaPredicted RBP8.36□□□□□ -1.07
CD44-227ENST00000528086 ARSJQ5FYB0 599 aaPredicted RBP8.36□□□□□ -1.07
CD44-227ENST00000528086 GLDNQ6ZMI3 551 aaPredicted RBP8.36□□□□□ -1.07
CD44-227ENST00000528086 PTX4Q96A99 478 aa8.36□□□□□ -1.07
CD44-227ENST00000528086 URM1Q9BTM9 101 aaKnown RBP8.36□□□□□ -1.07
CD44-227ENST00000528086 TOLLIPQ9H0E2 274 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms