RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 NHLH2Q02577 135 aa14.05□□□□□ -0.16
PCDHA3-201ENST00000522353 TMEM30BQ3MIR4 351 aa14.05□□□□□ -0.16
PCDHA3-201ENST00000522353 C12orf57Q99622 126 aa14.05□□□□□ -0.16
PCDHA3-201ENST00000522353 SPINK4O60575 86 aa14.05□□□□□ -0.16
PCDHA3-201ENST00000522353 COL8A1P27658 744 aa14.05□□□□□ -0.16
PCDHA3-201ENST00000522353 TOMM20LQ6UXN7 152 aa14.05□□□□□ -0.16
PCDHA3-201ENST00000522353 PRDM14Q9GZV8 571 aa14.05□□□□□ -0.16
PCDHA3-201ENST00000522353 KLHDC2Q9Y2U9 406 aa14.05□□□□□ -0.16
PCDHA3-201ENST00000522353 INTS1Q8N201 2190 aaKnown RBP14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 TIMM23BQ5SRD1 257 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 PCSK4Q6UW60 755 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 OR4A5Q8NH83 315 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 IGHV1-69-2A0A0G2JMI3 117 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 IGKV3-11P04433 115 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 CCKARP32238 428 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 EBLN2Q6P2I7 272 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 DYRK2Q92630 601 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 ABHD17AQ96GS6 310 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 GHITMQ9H3K2 345 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 OPN4Q9UHM6 478 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 LOC105371242A0A075B767 164 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 ODAMA1E959 279 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 NKX2-6A6NCS4 301 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 ZNF154Q13106 437 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 ZNF826PQ6ZT77 177 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 COL4A1P02462 1669 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 DOCK3Q8IZD9 2030 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 IGLV1-36A0A0B4J1U3 117 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 C11orf94C9JXX5 98 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 OR5AL1P0C617 328 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 FAM87AP0C7U9 286 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 CD300CQ08708 224 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 GUCA2BQ16661 112 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 STPG3Q8N7X2 389 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 METTL1Q9UBP6 276 aaKnown RBP14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 HIGD1AQ9Y241 93 aa14.04□□□□□ -0.16
PCDHA3-201ENST00000522353 P01737 135 aa14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 NANOS3P60323 173 aaKnown RBP14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 KHDC3LQ587J8 217 aa14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 SCN10AQ9Y5Y9 1956 aa14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 HOXA6P31267 233 aa14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 APOBEC3AP31941 199 aaPredicted RBP14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 FAM24BQ8N5W8 94 aa14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 OR10G8Q8NGN5 311 aa14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 ANAPC16Q96DE5 110 aa14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 RIF1Q5UIP0 2472 aaKnown RBP14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 HYPMO75409 117 aa14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 LIPFP07098 398 aa14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 COMPP49747 757 aaPredicted RBP14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 PARD6AQ9NPB6 346 aa14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 VAX2Q9UIW0 290 aa14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 MED19A0JLT2 244 aaPredicted RBP14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 NAT2P11245 290 aa14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 EWSR1Q01844 656 aaKnown RBP eCLIP14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 UNQ5815/PRO19632Q6UWF5 114 aa14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 LYZL2Q7Z4W2 148 aa14.03□□□□□ -0.16
PCDHA3-201ENST00000522353 CAMPP49913 170 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 FUT5Q11128 374 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 TUSC1Q2TAM9 212 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 LAMTOR1Q6IAA8 161 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 LYRM2Q9NU23 88 aaPredicted RBP14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 IDI2-AS1Q9NZ38 188 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 PRR13Q9NZ81 148 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 DOCK5Q9H7D0 1870 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 J3KRW8 73 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 TMEM50BP56557 158 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 RIGQ13278 110 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 LRRC75BQ2VPJ9 315 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 C16orf82Q7Z2V1 217 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 OR2T10Q8NGZ9 312 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 RHOVQ96L33 236 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 SRXN1Q9BYN0 137 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 CALYQ9NYX4 217 aa14.02□□□□□ -0.16
PCDHA3-201ENST00000522353 USF1P22415 310 aaPredicted RBP14.02□□□□□ -0.17
PCDHA3-201ENST00000522353 ARF6P62330 175 aa14.02□□□□□ -0.17
PCDHA3-201ENST00000522353 LINC01560Q8TB33 94 aa14.02□□□□□ -0.17
PCDHA3-201ENST00000522353 HDHD3Q9BSH5 251 aaPredicted RBP14.02□□□□□ -0.17
PCDHA3-201ENST00000522353 LINC00470Q9BZP3 86 aa14.02□□□□□ -0.17
PCDHA3-201ENST00000522353 ZNF703Q9H7S9 590 aaPredicted RBP14.02□□□□□ -0.17
PCDHA3-201ENST00000522353 LRRC37AA6NMS7 1700 aa14.02□□□□□ -0.17
PCDHA3-201ENST00000522353 SELENOTP62341 195 aa14.02□□□□□ -0.17
PCDHA3-201ENST00000522353 RPL8P62917 257 aaKnown RBP14.02□□□□□ -0.17
PCDHA3-201ENST00000522353 OR9G1Q8NH87 305 aa14.02□□□□□ -0.17
PCDHA3-201ENST00000522353 SNRNP40Q96DI7 357 aaKnown RBP14.02□□□□□ -0.17
PCDHA3-201ENST00000522353 ST6GAL2Q96JF0 529 aa14.02□□□□□ -0.17
PCDHA3-201ENST00000522353 IGHV3-72A0A0B4J1Y9 119 aa14.01□□□□□ -0.17
PCDHA3-201ENST00000522353 NPIPB13A6NJU9 1138 aa14.01□□□□□ -0.17
PCDHA3-201ENST00000522353 B4DEV8 164 aa14.01□□□□□ -0.17
PCDHA3-201ENST00000522353 NPIPB4C9JG80 1138 aa14.01□□□□□ -0.17
PCDHA3-201ENST00000522353 CTSBP07858 339 aa14.01□□□□□ -0.17
PCDHA3-201ENST00000522353 GLRXP35754 106 aa14.01□□□□□ -0.17
PCDHA3-201ENST00000522353 SLC35E3Q7Z769 313 aa14.01□□□□□ -0.17
PCDHA3-201ENST00000522353 ALX4Q9H161 411 aaPredicted RBP14.01□□□□□ -0.17
PCDHA3-201ENST00000522353 BRWD3Q6RI45 1802 aa14.01□□□□□ -0.17
PCDHA3-201ENST00000522353 ISG15P05161 165 aa14.01□□□□□ -0.17
PCDHA3-201ENST00000522353 SMAGPQ0VAQ4 97 aa14.01□□□□□ -0.17
PCDHA3-201ENST00000522353 SAXO1Q8IYX7 474 aa14.01□□□□□ -0.17
PCDHA3-201ENST00000522353 MS4A10Q96PG2 267 aa14.01□□□□□ -0.17
PCDHA3-201ENST00000522353 METTL26Q96S19 204 aa14.01□□□□□ -0.17
PCDHA3-201ENST00000522353 FAM74A3Q4VXF1 159 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms