RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 RCVRNP35243 200 aa24.03■■□□□ 1.44
LIMCH1-211ENST00000509638 CEACAM6P40199 344 aa24.03■■□□□ 1.44
LIMCH1-211ENST00000509638 OR10X1Q8NGY0 326 aa24.03■■□□□ 1.44
LIMCH1-211ENST00000509638 ABHD14AQ9BUJ0 271 aa24.03■■□□□ 1.44
LIMCH1-211ENST00000509638 CTDSPLO15194 276 aa24.02■■□□□ 1.44
LIMCH1-211ENST00000509638 HTR1DP28221 377 aa24.02■■□□□ 1.44
LIMCH1-211ENST00000509638 ZNF134P52741 427 aa24.02■■□□□ 1.44
LIMCH1-211ENST00000509638 SLC25A48Q6ZT89 311 aaKnown RBP24.02■■□□□ 1.44
LIMCH1-211ENST00000509638 OR2AK2Q8NG84 335 aa24.02■■□□□ 1.44
LIMCH1-211ENST00000509638 AJUBAQ96IF1 538 aa24.02■■□□□ 1.44
LIMCH1-211ENST00000509638 KLK11Q9UBX7 282 aa24.02■■□□□ 1.44
LIMCH1-211ENST00000509638 FAM96BQ9Y3D0 163 aa24.02■■□□□ 1.44
LIMCH1-211ENST00000509638 AMMECR1Q9Y4X0 333 aaPredicted RBP24.02■■□□□ 1.44
LIMCH1-211ENST00000509638 NAT1P18440 290 aa24.01■■□□□ 1.43
LIMCH1-211ENST00000509638 ETV6P41212 452 aa24.01■■□□□ 1.43
LIMCH1-211ENST00000509638 ACTBP60709 375 aa24.01■■□□□ 1.43
LIMCH1-211ENST00000509638 ACTG1P63261 375 aa24.01■■□□□ 1.43
LIMCH1-211ENST00000509638 ZNF79Q15937 498 aa24.01■■□□□ 1.43
LIMCH1-211ENST00000509638 DEFB112Q30KQ8 113 aa24.01■■□□□ 1.43
LIMCH1-211ENST00000509638 CT45A1Q5HYN5 189 aa24.01■■□□□ 1.43
LIMCH1-211ENST00000509638 MINOS1Q5TGZ0 78 aa24.01■■□□□ 1.43
LIMCH1-211ENST00000509638 LINC00311Q8N616 119 aa24.01■■□□□ 1.43
LIMCH1-211ENST00000509638 CT45A3Q8NHU0 189 aa24.01■■□□□ 1.43
LIMCH1-211ENST00000509638 RDH8Q9NYR8 311 aa24.01■■□□□ 1.43
LIMCH1-211ENST00000509638 MINOS1-NBL1R4GNA1 71 aa24.01■■□□□ 1.43
LIMCH1-211ENST00000509638 BUB1B-PAK6H3BSN5 160 aa24■■□□□ 1.43
LIMCH1-211ENST00000509638 LY6G6FQ5SQ64 297 aa24■■□□□ 1.43
LIMCH1-211ENST00000509638 OR5AP2Q8NGF4 316 aa24■■□□□ 1.43
LIMCH1-211ENST00000509638 MTFP1Q9UDX5 166 aa24■■□□□ 1.43
LIMCH1-211ENST00000509638 JMJD1CQ15652 2540 aa24■■□□□ 1.43
LIMCH1-211ENST00000509638 FBP1P09467 338 aa23.99■■□□□ 1.43
LIMCH1-211ENST00000509638 CTXN2P0C2S0 81 aa23.99■■□□□ 1.43
LIMCH1-211ENST00000509638 PAX6P26367 422 aa23.99■■□□□ 1.43
LIMCH1-211ENST00000509638 EDARADDQ8WWZ3 215 aa23.99■■□□□ 1.43
LIMCH1-211ENST00000509638 ZNF48Q96MX3 618 aaPredicted RBP23.99■■□□□ 1.43
LIMCH1-211ENST00000509638 NECAP2Q9NVZ3 263 aa23.99■■□□□ 1.43
LIMCH1-211ENST00000509638 HLA-DMAP28067 261 aa23.99■■□□□ 1.43
LIMCH1-211ENST00000509638 TAS2R46P59540 309 aa23.99■■□□□ 1.43
LIMCH1-211ENST00000509638 PYDC2Q56P42 97 aa23.99■■□□□ 1.43
LIMCH1-211ENST00000509638 CREB3L1Q96BA8 519 aa23.99■■□□□ 1.43
LIMCH1-211ENST00000509638 OCEL1Q9H607 264 aa23.99■■□□□ 1.43
LIMCH1-211ENST00000509638 DPM3Q9P2X0 92 aa23.99■■□□□ 1.43
LIMCH1-211ENST00000509638 ST8SIA5O15466 376 aa23.98■■□□□ 1.43
LIMCH1-211ENST00000509638 RBBP9O75884 186 aa23.98■■□□□ 1.43
LIMCH1-211ENST00000509638 SSX2Q16385 188 aa23.98■■□□□ 1.43
LIMCH1-211ENST00000509638 TUSC1Q2TAM9 212 aa23.98■■□□□ 1.43
LIMCH1-211ENST00000509638 H1FOOQ8IZA3 346 aaPredicted RBP23.98■■□□□ 1.43
LIMCH1-211ENST00000509638 TOLLIPQ9H0E2 274 aa23.98■■□□□ 1.43
LIMCH1-211ENST00000509638 IFI27L2Q9H2X8 130 aa23.98■■□□□ 1.43
LIMCH1-211ENST00000509638 HILPDAQ9Y5L2 63 aa23.98■■□□□ 1.43
LIMCH1-211ENST00000509638 LEUTXA8MZ59 168 aa23.97■■□□□ 1.43
LIMCH1-211ENST00000509638 PTBP1P26599 531 aaKnown RBP eCLIP23.97■■□□□ 1.43
LIMCH1-211ENST00000509638 HRH1P35367 487 aa23.97■■□□□ 1.43
LIMCH1-211ENST00000509638 CEACAM3P40198 252 aa23.97■■□□□ 1.43
LIMCH1-211ENST00000509638 CDK10Q15131 360 aa23.97■■□□□ 1.43
LIMCH1-211ENST00000509638 DYNAPQ8N1N2 210 aa23.97■■□□□ 1.43
LIMCH1-211ENST00000509638 SIGLECL1Q8N7X8 197 aa23.97■■□□□ 1.43
LIMCH1-211ENST00000509638 OR5H2Q8NGV7 314 aa23.97■■□□□ 1.43
LIMCH1-211ENST00000509638 C11orf54Q9H0W9 315 aaPredicted RBP23.97■■□□□ 1.43
LIMCH1-211ENST00000509638 GSTZ1O43708 216 aaPredicted RBP23.96■■□□□ 1.43
LIMCH1-211ENST00000509638 NFYAP23511 347 aaPredicted RBP23.96■■□□□ 1.43
LIMCH1-211ENST00000509638 LYSMD2Q8IV50 215 aa23.96■■□□□ 1.43
LIMCH1-211ENST00000509638 LYG1Q8N1E2 194 aa23.96■■□□□ 1.43
LIMCH1-211ENST00000509638 MALSU1Q96EH3 234 aa23.96■■□□□ 1.43
LIMCH1-211ENST00000509638 EHFQ9NZC4 300 aa23.96■■□□□ 1.43
LIMCH1-211ENST00000509638 RBMX2Q9Y388 322 aaKnown RBP23.96■■□□□ 1.43
LIMCH1-211ENST00000509638 LY6LH3BQJ8 138 aa23.95■■□□□ 1.43
LIMCH1-211ENST00000509638 PMP2P02689 132 aa23.95■■□□□ 1.43
LIMCH1-211ENST00000509638 IL3RAP26951 378 aa23.95■■□□□ 1.43
LIMCH1-211ENST00000509638 OR3A3P47888 321 aa23.95■■□□□ 1.43
LIMCH1-211ENST00000509638 RAB7AP51149 207 aa23.95■■□□□ 1.43
LIMCH1-211ENST00000509638 TPTE2P1Q5T6R2 138 aa23.95■■□□□ 1.43
LIMCH1-211ENST00000509638 TOMM40LQ969M1 308 aa23.95■■□□□ 1.43
LIMCH1-211ENST00000509638 ITGB1BP1O14713 200 aa23.95■■□□□ 1.42
LIMCH1-211ENST00000509638 OR5H8P0DN80 308 aa23.95■■□□□ 1.42
LIMCH1-211ENST00000509638 RFX2P48378 723 aa23.95■■□□□ 1.42
LIMCH1-211ENST00000509638 SSBP1Q04837 148 aaKnown RBP23.95■■□□□ 1.42
LIMCH1-211ENST00000509638 PLA1AQ53H76 456 aa23.95■■□□□ 1.42
LIMCH1-211ENST00000509638 LINC00299Q6ZSB3 139 aa23.95■■□□□ 1.42
LIMCH1-211ENST00000509638 Q8N402 240 aa23.95■■□□□ 1.42
LIMCH1-211ENST00000509638 RPEQ96AT9 228 aa23.95■■□□□ 1.42
LIMCH1-211ENST00000509638 SRRQ9GZT4 340 aa23.95■■□□□ 1.42
LIMCH1-211ENST00000509638 ZNF736B4DX44 427 aaPredicted RBP23.94■■□□□ 1.42
LIMCH1-211ENST00000509638 DIAPH2-AS1Q14236 149 aa23.94■■□□□ 1.42
LIMCH1-211ENST00000509638 ZDHHC16Q969W1 377 aa23.94■■□□□ 1.42
LIMCH1-211ENST00000509638 AGMATQ9BSE5 352 aa23.94■■□□□ 1.42
LIMCH1-211ENST00000509638 HSD17B6O14756 317 aa23.93■■□□□ 1.42
LIMCH1-211ENST00000509638 LANCL1O43813 399 aa23.93■■□□□ 1.42
LIMCH1-211ENST00000509638 ZNF137PP52743 207 aa23.93■■□□□ 1.42
LIMCH1-211ENST00000509638 RBMS3Q6XE24 437 aaKnown RBP23.93■■□□□ 1.42
LIMCH1-211ENST00000509638 OVCH2Q7RTZ1 564 aa23.93■■□□□ 1.42
LIMCH1-211ENST00000509638 ODF3L1Q8IXM7 274 aa23.93■■□□□ 1.42
LIMCH1-211ENST00000509638 MFSD4AQ8N468 514 aa23.93■■□□□ 1.42
LIMCH1-211ENST00000509638 ABHD14BQ96IU4 210 aa23.93■■□□□ 1.42
LIMCH1-211ENST00000509638 AKIP1Q9NQ31 210 aa23.93■■□□□ 1.42
LIMCH1-211ENST00000509638 SAA2-SAA4A0A096LPE2 208 aa23.92■■□□□ 1.42
LIMCH1-211ENST00000509638 OR8U9P0C7N5 309 aa23.92■■□□□ 1.42
LIMCH1-211ENST00000509638 SAA2P0DJI9 122 aaPredicted RBP23.92■■□□□ 1.42
LIMCH1-211ENST00000509638 ACTBL2Q562R1 376 aa23.92■■□□□ 1.42
LIMCH1-211ENST00000509638 LDLRAD3Q86YD5 345 aa23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms