RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-218	ENST00000493456	GPR176	Q14439	515 aa		13.54	□□□□□ -0.24
NUP50-218	ENST00000493456	SLC22A6	Q4U2R8	563 aa		13.54	□□□□□ -0.24
NUP50-218	ENST00000493456	ZNF833P	Q6ZTB9	187 aa		13.54	□□□□□ -0.24
NUP50-218	ENST00000493456	ZNF554	Q86TJ5	538 aa		13.54	□□□□□ -0.24
NUP50-218	ENST00000493456	ODF3L1	Q8IXM7	274 aa		13.54	□□□□□ -0.24
NUP50-218	ENST00000493456	RGP1	Q92546	391 aa	Predicted RBP	13.54	□□□□□ -0.24
NUP50-218	ENST00000493456	TMEM106A	Q96A25	262 aa		13.54	□□□□□ -0.24
NUP50-218	ENST00000493456	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	13.54	□□□□□ -0.24
NUP50-218	ENST00000493456	SLA2	Q9H6Q3	261 aa		13.54	□□□□□ -0.24
NUP50-218	ENST00000493456		H0Y980	276 aa		13.53	□□□□□ -0.24
NUP50-218	ENST00000493456	FADS2	O95864	444 aa	Known RBP	13.53	□□□□□ -0.24
NUP50-218	ENST00000493456	RCC1	P18754	421 aa	Predicted RBP	13.53	□□□□□ -0.24
NUP50-218	ENST00000493456	BDKRB2	P30411	391 aa		13.53	□□□□□ -0.24
NUP50-218	ENST00000493456	CX3CL1	P78423	397 aa		13.53	□□□□□ -0.24
NUP50-218	ENST00000493456	ADARB1	P78563	741 aa	Known RBP	13.53	□□□□□ -0.24
NUP50-218	ENST00000493456	LRRC36	Q1X8D7	754 aa		13.53	□□□□□ -0.24
NUP50-218	ENST00000493456	ACTBL2	Q562R1	376 aa		13.53	□□□□□ -0.24
NUP50-218	ENST00000493456	MRPS24	Q96EL2	167 aa	Known RBP	13.53	□□□□□ -0.24
NUP50-218	ENST00000493456	RHOV	Q96L33	236 aa		13.53	□□□□□ -0.24
NUP50-218	ENST00000493456	TAF9B	Q9HBM6	251 aa		13.53	□□□□□ -0.24
NUP50-218	ENST00000493456	ERVK13-1	Q9NX77	482 aa		13.53	□□□□□ -0.24
NUP50-218	ENST00000493456	NUBP2	Q9Y5Y2	271 aa		13.53	□□□□□ -0.24
NUP50-218	ENST00000493456	A3GALT2	U3KPV4	340 aa		13.53	□□□□□ -0.24
NUP50-218	ENST00000493456		A0A1W2PP11	408 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	SC5D	O75845	299 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	RGS11	O94810	467 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	ZP3	P21754	424 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	TPPP2	P59282	170 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	GNMT	Q14749	295 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	PLGLA	Q15195	96 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	AKIRIN2	Q53H80	203 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	LY6G6F	Q5SQ64	297 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	RAB12	Q6IQ22	244 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	FAM71F2	Q6NXP2	309 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	GTSCR1	Q86UQ5	136 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	ABHD5	Q8WTS1	349 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	CENPN	Q96H22	339 aa	Predicted RBP	13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	TUBA4B	Q9H853	241 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	MBNL3	Q9NUK0	354 aa	Known RBP	13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	KCNIP1	Q9NZI2	227 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	ORC6	Q9Y5N6	252 aa		13.52	□□□□□ -0.25
NUP50-218	ENST00000493456	SAA2-SAA4	A0A096LPE2	208 aa		13.51	□□□□□ -0.25
NUP50-218	ENST00000493456	RRH	O14718	337 aa		13.51	□□□□□ -0.25
NUP50-218	ENST00000493456	YPEL1	O60688	119 aa		13.51	□□□□□ -0.25
NUP50-218	ENST00000493456	SAA2	P0DJI9	122 aa	Predicted RBP	13.51	□□□□□ -0.25
NUP50-218	ENST00000493456	EGR2	P11161	476 aa	Predicted RBP	13.51	□□□□□ -0.25
NUP50-218	ENST00000493456	HTD2	P86397	168 aa		13.51	□□□□□ -0.25
NUP50-218	ENST00000493456	YPEL2	Q96QA6	119 aa		13.51	□□□□□ -0.25
NUP50-218	ENST00000493456	FBXL15	Q9H469	300 aa		13.51	□□□□□ -0.25
NUP50-218	ENST00000493456	RANGRF	Q9HD47	186 aa	Predicted RBP	13.51	□□□□□ -0.25
NUP50-218	ENST00000493456	CNOT2	Q9NZN8	540 aa	Known RBP	13.51	□□□□□ -0.25
NUP50-218	ENST00000493456	HERC2	O95714	4834 aa		13.51	□□□□□ -0.25
NUP50-218	ENST00000493456	FAM90A7P	A6NKC0	464 aa		13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	FAM90A23P	A8MXZ1	464 aa		13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	TFAP2A	P05549	437 aa		13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	GLA	P06280	429 aa		13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	PPP1CC	P36873	323 aa	Known RBP	13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	OR3A3	P47888	321 aa		13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	RIPK1	Q13546	671 aa		13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	CCDC58	Q4VC31	144 aa		13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	RPL22L1	Q6P5R6	122 aa	Known RBP	13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	UNQ5815/PRO19632	Q6UWF5	114 aa		13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	PPP1R27	Q86WC6	154 aa		13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	OR2AK2	Q8NG84	335 aa		13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	OR52L2P	Q8NGH6	319 aa		13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	MS4A10	Q96PG2	267 aa		13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	ZNF184	Q99676	751 aa	Predicted RBP	13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	PEX16	Q9Y5Y5	336 aa		13.5	□□□□□ -0.25
NUP50-218	ENST00000493456	SAC3D1	A6NKF1	404 aa		13.49	□□□□□ -0.25
NUP50-218	ENST00000493456	GTF2A1	P52655	376 aa	Predicted RBP	13.49	□□□□□ -0.25
NUP50-218	ENST00000493456	MOGAT2	Q3SYC2	334 aa		13.49	□□□□□ -0.25
NUP50-218	ENST00000493456	LCN12	Q6JVE5	192 aa		13.49	□□□□□ -0.25
NUP50-218	ENST00000493456	FAM131A	Q6UXB0	335 aa		13.49	□□□□□ -0.25
NUP50-218	ENST00000493456	THAP7	Q9BT49	309 aa	Predicted RBP	13.49	□□□□□ -0.25
NUP50-218	ENST00000493456	TMED9	Q9BVK6	235 aa		13.49	□□□□□ -0.25
NUP50-218	ENST00000493456	OR5H14	A6NHG9	310 aa		13.48	□□□□□ -0.25
NUP50-218	ENST00000493456	RBBP9	O75884	186 aa		13.48	□□□□□ -0.25
NUP50-218	ENST00000493456	TRGV3	P03979	118 aa		13.48	□□□□□ -0.25
NUP50-218	ENST00000493456	MAS1	P04201	325 aa		13.48	□□□□□ -0.25
NUP50-218	ENST00000493456	ALPL	P05186	524 aa		13.48	□□□□□ -0.25
NUP50-218	ENST00000493456	GABRB1	P18505	474 aa		13.48	□□□□□ -0.25
NUP50-218	ENST00000493456	LFNG	Q8NES3	379 aa		13.48	□□□□□ -0.25
NUP50-218	ENST00000493456	OR9G4	Q8NGQ1	327 aa		13.48	□□□□□ -0.25
NUP50-218	ENST00000493456	GALM	Q96C23	342 aa		13.48	□□□□□ -0.25
NUP50-218	ENST00000493456		Q96MT0	163 aa		13.48	□□□□□ -0.25
NUP50-218	ENST00000493456	FAM103A1	Q9BTL3	118 aa	Known RBP	13.48	□□□□□ -0.25
NUP50-218	ENST00000493456	IFI27L2	Q9H2X8	130 aa		13.48	□□□□□ -0.25
NUP50-218	ENST00000493456	PIPOX	Q9P0Z9	390 aa		13.48	□□□□□ -0.25
NUP50-218	ENST00000493456	CKLF	Q9UBR5	152 aa		13.48	□□□□□ -0.25
NUP50-218	ENST00000493456	TNC	P24821	2201 aa		13.47	□□□□□ -0.25
NUP50-218	ENST00000493456	C13orf42	A0A1B0GVH6	325 aa		13.47	□□□□□ -0.25
NUP50-218	ENST00000493456		H3BUA1	57 aa		13.47	□□□□□ -0.25
NUP50-218	ENST00000493456	FCN1	O00602	326 aa		13.47	□□□□□ -0.25
NUP50-218	ENST00000493456	IGFBP3	P17936	291 aa	Predicted RBP	13.47	□□□□□ -0.25
NUP50-218	ENST00000493456	FUT3	P21217	361 aa		13.47	□□□□□ -0.25
NUP50-218	ENST00000493456	MC5R	P33032	325 aa		13.47	□□□□□ -0.25
NUP50-218	ENST00000493456	KLF5	Q13887	457 aa	Predicted RBP	13.47	□□□□□ -0.25
NUP50-218	ENST00000493456	C1orf146	Q5VVC0	180 aa		13.47	□□□□□ -0.25
NUP50-218	ENST00000493456	GLIPR1L1	Q6UWM5	242 aa		13.47	□□□□□ -0.25
NUP50-218	ENST00000493456	ZNF562	Q6V9R5	426 aa		13.47	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms