RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 ZNF497Q6ZNH5 498 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 DRAM1Q8N682 238 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 C8orf31Q8N9H6 132 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 OR4X2Q8NGF9 303 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 OR56B4Q8NH76 319 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 SUN5Q8TC36 379 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 CCDC107Q8WV48 283 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 MYDGFQ969H8 173 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 ARL11Q969Q4 196 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 R3HDM4Q96D70 268 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 BANF2Q9H503 90 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 SCN3BQ9NY72 215 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 ETAA1Q9NY74 926 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 RCC2Q9P258 522 aaKnown RBP5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 GHRLQ9UBU3 117 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 TRAPPC2LQ9UL33 140 aa5.4□□□□□ -1.54
CCDC88A-213ENST00000476903 NOTCH3Q9UM47 2321 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 A0A1W2PPE3 182 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 TCRBV4S1A1TA0A5B7 111 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 SH2D7A6NKC9 451 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 ANKRD65E5RJM6 399 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 PTGES3LE9PB15 166 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 CCRL2O00421 344 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 PIN1P1O15428 100 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 SPINT2O43291 252 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 CA11O75493 328 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 CRTAPO75718 401 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 IGKV1D-33P01593 117 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 IGKV1-33P01594 117 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 GAPDHP04406 335 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 GLAP06280 429 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 UBBP0CG47 229 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 PF4V1P10720 104 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 MGMTP16455 207 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 FUT3P21217 361 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 PTTG1IPP53801 180 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 LOXL3P58215 753 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 GABPB1Q06547 395 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 ZNF816Q0VGE8 651 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 DIAPH2-AS1Q14236 149 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 SPHARQ15513 63 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 BEAN1Q3B7T3 259 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 Q3ZCU0 254 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 ACSM3Q53FZ2 586 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 C9orf152Q5JTZ5 239 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 C6orf141Q5SZD1 244 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 C6orf183Q5T699 404 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 KPRPQ5T749 579 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 SYT6Q5T7P8 510 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 RAB12Q6IQ22 244 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 MOB3BQ86TA1 216 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 LYPD6Q86Y78 171 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 MS4A15Q8N5U1 240 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 LINC00311Q8N616 119 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 C5orf56Q8N8D9 126 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 TMEM104Q8NE00 496 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 SELENOIQ9C0D9 397 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 CST11Q9H112 138 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 NKX1-2Q9UD57 310 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 TSSC4Q9Y5U2 329 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 PEX16Q9Y5Y5 336 aa5.39□□□□□ -1.55
CCDC88A-213ENST00000476903 TGP01266 2768 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 IGHV3-43A0A0B4J1X8 118 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 A0A0B4J203 849 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 IGHV1-3A0A0C4DH29 117 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 PSMB11A5LHX3 300 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 C12orf77C9JDV5 145 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 FGF16O43320 207 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 TXNL1O43396 289 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 PDCD6O75340 191 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 SC5DO75845 299 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 IGHV3-43DP0DP04 118 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 BTF3P20290 206 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 REG1BP48304 166 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 AQP4P55087 323 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 HNF4GQ14541 408 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 MED22Q15528 200 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 TCTEX1D4Q5JR98 221 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 KHDC1LQ5JSQ8 128 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 RBM48Q5RL73 367 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 GLT8D1Q68CQ7 371 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 UNQ9370/PRO34162Q6UXP9 181 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 SLC25A48Q6ZT89 311 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 IZUMO1Q8IYV9 350 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 GAPTQ8N292 157 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 PRR18Q8N4B5 295 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 OR4K15Q8NH41 348 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 UBALD1Q8TB05 177 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 CHPT1Q8WUD6 406 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 RTN4IP1Q8WWV3 396 aaPredicted RBP5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 PHYHIPQ92561 330 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 UFD1Q92890 307 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 FAM46BQ96A09 425 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 TMED9Q9BVK6 235 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 VCX3BQ9H321 246 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 KCNIP1Q9NZI2 227 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 GNG12Q9UBI6 72 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 LSM2Q9Y333 95 aaKnown RBP5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 TPRKBQ9Y3C4 175 aa5.38□□□□□ -1.55
CCDC88A-213ENST00000476903 PRKDCP78527 4128 aaKnown RBP5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms