RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 TMEM222Q9H0R3 208 aa12.38□□□□□ -0.43
TCOF1-202ENST00000377797 PNRC2Q9NPJ4 139 aaKnown RBP12.38□□□□□ -0.43
TCOF1-202ENST00000377797 ARL3P36405 182 aa12.38□□□□□ -0.43
TCOF1-202ENST00000377797 CD200P41217 278 aa12.38□□□□□ -0.43
TCOF1-202ENST00000377797 RAB13P51153 203 aa12.38□□□□□ -0.43
TCOF1-202ENST00000377797 DYNLT3P51808 116 aa12.38□□□□□ -0.43
TCOF1-202ENST00000377797 NKX6-2Q9C056 277 aaPredicted RBP12.38□□□□□ -0.43
TCOF1-202ENST00000377797 POMT1Q9Y6A1 747 aa12.38□□□□□ -0.43
TCOF1-202ENST00000377797 A0A1B0GU03 582 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 YIF1AO95070 293 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 CYB5R3P00387 301 aaPredicted RBP12.37□□□□□ -0.43
TCOF1-202ENST00000377797 NQO2P16083 231 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 BTCP35070 178 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 PJVKQ0ZLH3 352 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 IL34Q6ZMJ4 242 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 SMCO4Q9NRQ5 59 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 OR5AC2Q9NZP5 309 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 IL36RNQ9UBH0 155 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 PCNTO95613 3336 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 OR7C2O60412 319 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 FGF2P09038 288 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 CD40P25942 277 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 RNFT1Q5M7Z0 435 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 ASCL5Q7RTU5 278 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 MARS2Q96GW9 593 aaKnown RBP12.37□□□□□ -0.43
TCOF1-202ENST00000377797 TRAF4Q9BUZ4 470 aaPredicted RBP12.37□□□□□ -0.43
TCOF1-202ENST00000377797 ELOVL5Q9NYP7 299 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 PIPOXQ9P0Z9 390 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 LY86O95711 162 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 MMP7P09237 267 aaPredicted RBP12.37□□□□□ -0.43
TCOF1-202ENST00000377797 GLRX5Q86SX6 157 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 DTD1Q8TEA8 209 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 OR10C1Q96KK4 312 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 ZDHHC11Q9H8X9 412 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 OR1A1Q9P1Q5 309 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 RNF115Q9Y4L5 304 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 PQLC2LA1A4F0 135 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 RAB19A4D1S5 217 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 TGIF2LYQ8IUE0 185 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 TGIF2LXQ8IUE1 241 aa12.37□□□□□ -0.43
TCOF1-202ENST00000377797 PCDH15Q96QU1 1955 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 EWSR1Q01844 656 aaKnown RBP eCLIP12.36□□□□□ -0.43
TCOF1-202ENST00000377797 DUXBA0A1W2PPF3 345 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 NCBP2LA6PVI3 153 aaKnown RBP12.36□□□□□ -0.43
TCOF1-202ENST00000377797 ZNF727A8MUV8 499 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 ZNF345Q14585 488 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 RTP5Q14D33 572 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 OR4F5Q8NH21 305 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 LINC01560Q8TB33 94 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 OR4F4Q96R69 305 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 F6UZH7 168 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 RNASEK-C17orf49H0YIS7 233 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 GUK1Q16774 197 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 HIST2H3PS2Q5TEC6 136 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 RPUSD4Q96CM3 377 aaKnown RBP12.36□□□□□ -0.43
TCOF1-202ENST00000377797 ZNF106Q9H2Y7 1883 aaKnown RBP12.36□□□□□ -0.43
TCOF1-202ENST00000377797 H0Y980 276 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 PGLYRP1O75594 196 aaPredicted RBP12.36□□□□□ -0.43
TCOF1-202ENST00000377797 CXorf58Q96LI9 332 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 URGCP-MRPS24S4R325 110 aa12.36□□□□□ -0.43
TCOF1-202ENST00000377797 H0YL77 283 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 OR2A4O95047 310 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 IL18BPO95998 194 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 FABP1P07148 127 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 KIR2DL2P43627 348 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-202ENST00000377797 ID4P47928 161 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 OR10Z1Q8NGY1 313 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 OR2A7Q96R45 310 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 FKBP11Q9NYL4 201 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 RCC2Q9P258 522 aaKnown RBP12.35□□□□□ -0.43
TCOF1-202ENST00000377797 COL4A3Q01955 1670 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 KIAA2026Q5HYC2 2103 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 ZNRF1Q8ND25 227 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 MEGF10Q96KG7 1140 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 ABHD14AQ9BUJ0 271 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 TAS2R45P59539 299 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 HTD2P86397 168 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 MMP26Q9NRE1 261 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 ATXN7O15265 892 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-202ENST00000377797 MT-ND4LP03901 98 aa12.35□□□□□ -0.43
TCOF1-202ENST00000377797 MED13LQ71F56 2210 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 IQCF6A8MYZ5 107 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 S100A7P31151 101 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 CEACAM3P40198 252 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 REG1BP48304 166 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 FFAR4Q5NUL3 377 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 MRGPRGQ86SM5 289 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 FAM89BQ8N5H3 189 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 VSTM2AQ8TAG5 236 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 DAZAP1Q96EP5 407 aaKnown RBP12.34□□□□□ -0.43
TCOF1-202ENST00000377797 PTPRSQ13332 1948 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 USF3Q68DE3 2245 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 MDFIC2A0A1B0GVS7 189 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 RAB29O14966 203 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 THBS3P49746 956 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 NHLH2Q02577 135 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 CALYQ9NYX4 217 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 ZP1P60852 638 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 SSX2Q16385 188 aa12.34□□□□□ -0.43
TCOF1-202ENST00000377797 DBX2Q6ZNG2 339 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 1069.9 ms