RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 TEPPQ6URK8 271 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 DUX5Q96PT3 197 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 TUBA4BQ9H853 241 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 LRRC75AQ8NAA5 344 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 OR10J6PQ8NGY7 276 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 ASB13Q8WXK3 278 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 OR4C12Q96R67 309 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 COL11A2P13942 1736 aaPredicted RBP13.49□□□□□ -0.25
PTPRF-201ENST00000359947 AHCTF1Q8WYP5 2266 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 SRSF10O75494 262 aaKnown RBP13.49□□□□□ -0.25
PTPRF-201ENST00000359947 RPL27AP46776 148 aaKnown RBP13.49□□□□□ -0.25
PTPRF-201ENST00000359947 AANATQ16613 207 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 OGG1O15527 345 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 DDB2Q92466 427 aa13.49□□□□□ -0.25
PTPRF-201ENST00000359947 hCG_38984A0A1B0GV85 526 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 IGSF23A1L1A6 192 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 FAM27BQ5VT28 67 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 M0R2Z0 102 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 KIR2DL2P43627 348 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-201ENST00000359947 KHDC3LQ587J8 217 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 PRSS54Q6PEW0 395 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 TRAV20A0A0B4J274 112 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 MFSD2BA6NFX1 497 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 TSPAN2O60636 221 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 VSIG8P0DPA2 414 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 LDLRAD3Q86YD5 345 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 EIF4E3Q8N5X7 224 aaKnown RBP13.48□□□□□ -0.25
PTPRF-201ENST00000359947 SMIM12Q96EX1 92 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 IGHV1-69-2A0A0G2JMI3 117 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 EFNB2P52799 333 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 SNAI3Q3KNW1 292 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 SMUG1Q53HV7 270 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 ZNF561Q8N587 486 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 LEUTXA8MZ59 168 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 MPV17P39210 176 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 SSX8Q7RTT4 187 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 HSD17B13Q7Z5P4 300 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-201ENST00000359947 OR8G5Q8NG78 346 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 CEACAM18A8MTB9 384 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 FAM27E3Q08E93 113 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 LINC00596Q86U02 117 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 NFAM1Q8NET5 270 aaPredicted RBP13.48□□□□□ -0.25
PTPRF-201ENST00000359947 SLC35B3Q9H1N7 401 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 YAE1D1Q9NRH1 226 aa13.48□□□□□ -0.25
PTPRF-201ENST00000359947 OR4C45A6NMZ5 311 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 RFLNBQ8N5W9 214 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 PMS2P11Q13670 270 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 PCOLCEQ15113 449 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 TMEM255AQ5JRV8 349 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 DHRS11Q6UWP2 260 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 Q6ZN92 141 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 LINC00299Q6ZSB3 139 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 FAM24BQ8N5W8 94 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 HELTA6NFD8 242 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 SLC25A17O43808 307 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 GALP22466 123 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 MOGAT2Q3SYC2 334 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 TEX29Q8N6K0 151 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 THY1P04216 161 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 PGA4P0DJD7 388 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 Q9N2K0 584 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 MIOXQ9UGB7 285 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 A0A1B0GU03 582 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 MGST3O14880 152 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 PAGE4O60829 102 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 KLF14Q8TD94 323 aaPredicted RBP13.47□□□□□ -0.25
PTPRF-201ENST00000359947 ARFGEF1Q9Y6D6 1849 aa13.47□□□□□ -0.25
PTPRF-201ENST00000359947 PILRAQ9UKJ1 303 aa13.46□□□□□ -0.25
PTPRF-201ENST00000359947 SCTP09683 121 aa13.46□□□□□ -0.25
PTPRF-201ENST00000359947 OR8A1Q8NGG7 326 aa13.46□□□□□ -0.25
PTPRF-201ENST00000359947 SIGLEC12Q96PQ1 595 aa13.46□□□□□ -0.25
PTPRF-201ENST00000359947 GPHA2Q96T91 129 aa13.46□□□□□ -0.25
PTPRF-201ENST00000359947 INTS1Q8N201 2190 aaKnown RBP13.46□□□□□ -0.25
PTPRF-201ENST00000359947 TTRP02766 147 aa13.46□□□□□ -0.25
PTPRF-201ENST00000359947 AMMECR1LQ6DCA0 310 aa13.46□□□□□ -0.25
PTPRF-201ENST00000359947 ABHD12Q8N2K0 398 aa13.46□□□□□ -0.25
PTPRF-201ENST00000359947 PNKDQ8N490 385 aa13.46□□□□□ -0.25
PTPRF-201ENST00000359947 AKAP6Q13023 2319 aa13.46□□□□□ -0.25
PTPRF-201ENST00000359947 C19orf35Q6ZS72 473 aa13.46□□□□□ -0.25
PTPRF-201ENST00000359947 GBGT1Q8N5D6 347 aa13.46□□□□□ -0.25
PTPRF-201ENST00000359947 GPA33Q99795 319 aa13.46□□□□□ -0.25
PTPRF-201ENST00000359947 THSD7AQ9UPZ6 1657 aa13.46□□□□□ -0.25
PTPRF-201ENST00000359947 RBFOX3A6NFN3 312 aa13.46□□□□□ -0.26
PTPRF-201ENST00000359947 ZNF735P0CB33 412 aa13.46□□□□□ -0.26
PTPRF-201ENST00000359947 RIGQ13278 110 aa13.46□□□□□ -0.26
PTPRF-201ENST00000359947 SFXN3Q9BWM7 321 aa13.46□□□□□ -0.26
PTPRF-201ENST00000359947 MANBALQ9NQG1 85 aa13.46□□□□□ -0.26
PTPRF-201ENST00000359947 RALYQ9UKM9 306 aaKnown RBP13.46□□□□□ -0.26
PTPRF-201ENST00000359947 CACNA1IQ9P0X4 2223 aa13.46□□□□□ -0.26
PTPRF-201ENST00000359947 IGHV3-48P01763 117 aa13.46□□□□□ -0.26
PTPRF-201ENST00000359947 CEACAM1P13688 526 aa13.46□□□□□ -0.26
PTPRF-201ENST00000359947 FCGR2BP31994 310 aaPredicted RBP13.46□□□□□ -0.26
PTPRF-201ENST00000359947 SNX22Q96L94 193 aa13.46□□□□□ -0.26
PTPRF-201ENST00000359947 PAXXQ9BUH6 204 aa13.46□□□□□ -0.26
PTPRF-201ENST00000359947 ZNF207O43670 478 aaKnown RBP13.45□□□□□ -0.26
PTPRF-201ENST00000359947 IGHV3-23P01764 117 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 RNF212Q495C1 297 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 ZNF880Q6PDB4 577 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 CD81P60033 236 aa13.45□□□□□ -0.26
PTPRF-201ENST00000359947 LRRC75BQ2VPJ9 315 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms