RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 IGHV2OR16-5A0A0B4J2B6 119 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 FOXS1O43638 330 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 CIDEAO60543 219 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 CBR3O75828 277 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 CLDN14O95500 239 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 IGLC2P0DOY2 106 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 IGLC3P0DOY3 106 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 CTSEP14091 401 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 FSTP19883 344 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 CD24P25063 80 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 DAP3P51398 398 aaKnown RBP6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 MTCP1P56278 107 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 HERV-K104P61576 105 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 MEF2BQ02080 365 aaPredicted RBP6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 ZNF90Q03938 601 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 C1orf61Q13536 156 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 KRTCAP3Q53RY4 240 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 COA6Q5JTJ3 125 aaKnown RBP6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 TEX43Q6ZNM6 134 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 MED12LQ86YW9 2145 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 OR14C36Q8NHC7 312 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 OVCA2Q8WZ82 227 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 NEUROG1Q92886 237 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 C18orf12Q96KH6 178 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 AGMATQ9BSE5 352 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 CCL28Q9NRJ3 127 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 SLC7A10Q9NS82 523 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 IGHV3-20A0A0C4DH32 117 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 A0A1W2PRS3 328 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 CEACAM5P06731 702 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 WNT2P09544 360 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 PDLIM4P50479 330 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 FUT6P51993 359 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 ACOT6Q3I5F7 207 aaPredicted RBP6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 SNAI3Q3KNW1 292 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 HES3Q5TGS1 186 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 OR4D5Q8NGN0 318 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 ZNF764Q96H86 408 aaPredicted RBP6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 RPP25Q9BUL9 199 aaKnown RBP6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 ANGPTL4Q9BY76 406 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 ZNF442Q9H7R0 627 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 TECRQ9NZ01 308 aaKnown RBP6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 CISD1Q9NZ45 108 aaKnown RBP6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 PIGLQ9Y2B2 252 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 LSM4Q9Y4Z0 139 aaKnown RBP6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 NOTCH4Q99466 2003 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 MGAQ8IWI9 3026 aa6.23□□□□□ -1.41
LIMCH1-207ENST00000508466 DOCK10Q96BY6 2186 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 IGKV1D-13A0A0B4J2D9 117 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 SH2D7A6NKC9 451 aaPredicted RBP6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 OR7C1O76099 320 aaPredicted RBP6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 NUDT3O95989 172 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 PRNPP04156 253 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 IGKV1-13P0DP09 117 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 MGST1P10620 155 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 CTSSP25774 331 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 TSPOP30536 169 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 PAX9P55771 341 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 FXYD3Q14802 87 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 ZNF141Q15928 474 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 PLPPR5Q32ZL2 321 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 FDX2Q6P4F2 183 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 ZNF818PQ6ZRF7 136 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 KIR3DL3Q8N743 410 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 OR1N2Q8NGR9 330 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 OR2Y1Q8NGV0 311 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 RSPRY1Q96DX4 576 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 MMABQ96EY8 250 aaPredicted RBP6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 MRGPRX1Q96LB2 322 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 DGAT2Q96PD7 388 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 OR4C12Q96R67 309 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 GPX7Q96SL4 187 aaPredicted RBP6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 MRPL18Q9H0U6 180 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 GTSF1LQ9H1H1 148 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 DNAJC5Q9H3Z4 198 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 FNDC4Q9H6D8 234 aaPredicted RBP6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 HRASLS2Q9NWW9 162 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 CLEC5AQ9NY25 188 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 BET1LQ9NYM9 111 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 ARFGEF3Q5TH69 2177 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 TMED7-TICAM2A0A0A6YYA0 188 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 TRAV38-1A0A0B4J264 116 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 A0A1B0GW64 132 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 A0A1W2PNR3 127 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 GAGE12BA1L429 117 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 CLEC18AA5D8T8 446 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 K7EP13 123 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 MPPED1O15442 326 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 PITX3O75364 302 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 ADH1BP00325 375 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 CELA3BP08861 270 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 MDH2P40926 338 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 OR1D4P47884 311 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 RPL15P61313 204 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 SMAGPQ0VAQ4 97 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 ARL6IP1Q15041 203 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 FAM69BQ5VUD6 431 aa6.22□□□□□ -1.41
LIMCH1-207ENST00000508466 MRPL54Q6P161 138 aaKnown RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms