RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 SPRY3O43610 288 aa11.49□□□□□ -0.57
GPC1-209ENST00000495100 CRYGSP22914 178 aa11.49□□□□□ -0.57
GPC1-209ENST00000495100 FKBP2P26885 142 aaKnown RBP11.49□□□□□ -0.57
GPC1-209ENST00000495100 MRPL49Q13405 166 aaKnown RBP11.49□□□□□ -0.57
GPC1-209ENST00000495100 DEFB124Q8NES8 71 aa11.49□□□□□ -0.57
GPC1-209ENST00000495100 OR2Z1Q8NG97 314 aa11.49□□□□□ -0.57
GPC1-209ENST00000495100 OR4F5Q8NH21 305 aa11.49□□□□□ -0.57
GPC1-209ENST00000495100 MOB3AQ96BX8 217 aa11.49□□□□□ -0.57
GPC1-209ENST00000495100 OR4F4Q96R69 305 aa11.49□□□□□ -0.57
GPC1-209ENST00000495100 PFDN5Q99471 154 aa11.49□□□□□ -0.57
GPC1-209ENST00000495100 ATPIF1Q9UII2 106 aa11.49□□□□□ -0.57
GPC1-209ENST00000495100 TIMM8BQ9Y5J9 83 aaPredicted RBP11.49□□□□□ -0.57
GPC1-209ENST00000495100 NUP210LQ5VU65 1888 aa11.49□□□□□ -0.57
GPC1-209ENST00000495100 TRDCB7Z8K6 153 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 SNCAP37840 140 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 ZNF83P51522 516 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 ZNF573Q86YE8 665 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 SAT2Q96F10 170 aaPredicted RBP11.48□□□□□ -0.57
GPC1-209ENST00000495100 TMEM222Q9H0R3 208 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 RPL36A-HNRNPH2H7BZ11 118 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 PGLYRP1O75594 196 aaPredicted RBP11.48□□□□□ -0.57
GPC1-209ENST00000495100 TMEM50AO95807 157 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 APELAP0DMC3 54 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 RAB5AP20339 215 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 SSTR5P35346 364 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 PMELP40967 661 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 HIST3H3Q16695 136 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 TBC1D28Q2M2D7 210 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 SLC25A53Q5H9E4 307 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 MSI2Q96DH6 328 aaKnown RBP11.48□□□□□ -0.57
GPC1-209ENST00000495100 SNX22Q96L94 193 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 TAAR9Q96RI9 348 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 MYOZ1Q9NP98 299 aaPredicted RBP11.48□□□□□ -0.57
GPC1-209ENST00000495100 NPIPB13A6NJU9 1138 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 NPIPB4C9JG80 1138 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 LINC01387J3KSC0 135 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 FABP4P15090 132 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 GCH1P30793 250 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 SELENOHQ8IZQ5 122 aaKnown RBP11.48□□□□□ -0.57
GPC1-209ENST00000495100 TMEM37Q8WXS4 190 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 GCM1Q9NP62 436 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 DLL3Q9NYJ7 618 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 MIOXQ9UGB7 285 aa11.48□□□□□ -0.57
GPC1-209ENST00000495100 FGF16O43320 207 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 NEURL1O76050 574 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 CHRNA7P36544 502 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 NAAAQ02083 359 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 ZNF766Q5HY98 468 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 ASB13Q8WXK3 278 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 ZDHHC16Q969W1 377 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 TVP23CQ96ET8 276 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 TACC2O95359 2948 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 ACTL6BO94805 426 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 OR2H2O95918 312 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 TRGC2P03986 189 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 VDAC1P21796 283 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 SF3B5Q9BWJ5 86 aaKnown RBP11.47□□□□□ -0.57
GPC1-209ENST00000495100 TM2D1Q9BX74 207 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 PATZ1Q9HBE1 687 aaKnown RBP11.47□□□□□ -0.57
GPC1-209ENST00000495100 HEYLQ9NQ87 328 aaPredicted RBP11.47□□□□□ -0.57
GPC1-209ENST00000495100 PARP11Q9NR21 331 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 ZDHHC8Q9ULC8 765 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 IGHV3-48P01763 117 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 CCL1P22362 96 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 GNG10P50151 68 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 PPP1CBP62140 327 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 TLE4Q04727 773 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 HERPUD1Q15011 391 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 SURF2Q15527 256 aaPredicted RBP11.47□□□□□ -0.57
GPC1-209ENST00000495100 PRR31Q5SQ13 230 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 GFI1BQ5VTD9 330 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 BOD1Q96IK1 185 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 SMIM7Q9BQ49 75 aa11.47□□□□□ -0.57
GPC1-209ENST00000495100 AQP7O14520 342 aa11.46□□□□□ -0.57
GPC1-209ENST00000495100 FCGR3BO75015 233 aa11.46□□□□□ -0.57
GPC1-209ENST00000495100 HLA-GP17693 338 aa11.46□□□□□ -0.57
GPC1-209ENST00000495100 DTYMKP23919 212 aa11.46□□□□□ -0.57
GPC1-209ENST00000495100 B3GALT5-AS1P59052 145 aa11.46□□□□□ -0.57
GPC1-209ENST00000495100 RTP5Q14D33 572 aa11.46□□□□□ -0.57
GPC1-209ENST00000495100 Q6ZRM9 215 aa11.46□□□□□ -0.57
GPC1-209ENST00000495100 RPRMQ9NS64 109 aa11.46□□□□□ -0.57
GPC1-209ENST00000495100 POMT1Q9Y6A1 747 aa11.46□□□□□ -0.57
GPC1-209ENST00000495100 TNRC18O15417 2968 aaPredicted RBP11.46□□□□□ -0.57
GPC1-209ENST00000495100 PRSS44E7EML9 344 aa11.46□□□□□ -0.58
GPC1-209ENST00000495100 RAMP3O60896 148 aa11.46□□□□□ -0.58
GPC1-209ENST00000495100 F2RP25116 425 aa11.46□□□□□ -0.58
GPC1-209ENST00000495100 SMIM8Q96KF7 97 aa11.46□□□□□ -0.58
GPC1-209ENST00000495100 LAMP3Q9UQV4 416 aa11.46□□□□□ -0.58
GPC1-209ENST00000495100 HSPB1P04792 205 aaKnown RBP11.46□□□□□ -0.58
GPC1-209ENST00000495100 DANCRP0C864 163 aa11.46□□□□□ -0.58
GPC1-209ENST00000495100 CRIP3Q6Q6R5 217 aa11.46□□□□□ -0.58
GPC1-209ENST00000495100 BTNL8Q6UX41 500 aa11.46□□□□□ -0.58
GPC1-209ENST00000495100 ZCCHC24Q8N2G6 241 aaKnown RBP11.46□□□□□ -0.58
GPC1-209ENST00000495100 GATAD1Q8WUU5 269 aa11.46□□□□□ -0.58
GPC1-209ENST00000495100 CABLES2Q9BTV7 478 aa11.46□□□□□ -0.58
GPC1-209ENST00000495100 Q9N2K0 584 aa11.46□□□□□ -0.58
GPC1-209ENST00000495100 ZNF391Q9UJN7 358 aa11.46□□□□□ -0.58
GPC1-209ENST00000495100 CHD3Q12873 2000 aaKnown RBP11.45□□□□□ -0.58
GPC1-209ENST00000495100 IGKV1-6A0A0C4DH72 117 aa11.45□□□□□ -0.58
GPC1-209ENST00000495100 SYNGR2O43760 224 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms