RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 HES3Q5TGS1 186 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 CYB5R2Q6BCY4 276 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 FADS6Q8N9I5 356 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 OR2V1Q8NHB1 315 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 C11orf40Q8WZ69 217 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 RASL10BQ96S79 203 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 PECRQ9BY49 303 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 TRBV20OR9-2A0A075B6H5 130 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 NKX6-3A6NJ46 265 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 SOCS1O15524 211 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 HPNP05981 417 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 BLVRBP30043 206 aaPredicted RBP4.59□□□□□ -1.67
SYNE1-220ENST00000471834 LHX2P50458 406 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 HES1Q14469 280 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 LRRC75BQ2VPJ9 315 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 H1FNTQ75WM6 255 aaPredicted RBP4.59□□□□□ -1.67
SYNE1-220ENST00000471834 MRGPRGQ86SM5 289 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 TECTBQ96PL2 329 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 GLRX2Q9NS18 164 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 CLCF1Q9UBD9 225 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 FZD2Q14332 565 aa4.59□□□□□ -1.68
SYNE1-220ENST00000471834 TPTE2P1Q5T6R2 138 aa4.59□□□□□ -1.68
SYNE1-220ENST00000471834 RPUSD3Q6P087 351 aaKnown RBP4.59□□□□□ -1.68
SYNE1-220ENST00000471834 SEMA6DQ8NFY4 1073 aa4.59□□□□□ -1.68
SYNE1-220ENST00000471834 OR10AD1Q8NGE0 317 aa4.59□□□□□ -1.68
SYNE1-220ENST00000471834 SLAMF6Q96DU3 332 aa4.59□□□□□ -1.68
SYNE1-220ENST00000471834 LOXL4Q96JB6 756 aa4.59□□□□□ -1.68
SYNE1-220ENST00000471834 AKR1E2Q96JD6 320 aa4.59□□□□□ -1.68
SYNE1-220ENST00000471834 LRP4O75096 1905 aa4.59□□□□□ -1.68
SYNE1-220ENST00000471834 J3QR06 171 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 PPBPP02775 128 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 ZNF585BQ52M93 769 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 ADAM5Q6NVV9 412 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 OR10G7Q8NGN6 311 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 C22orf15Q8WYQ4 148 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 EMC6Q9BV81 110 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 OR11A1Q9GZK7 315 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 RIMS4Q9H426 269 aaPredicted RBP4.58□□□□□ -1.68
SYNE1-220ENST00000471834 FAM166BA8MTA8 275 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 EREGO14944 169 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 HPRT1P00492 218 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 EDDM3BP56851 147 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 RAB11AP62491 216 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 DEFB121Q5J5C9 76 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 SYT13Q7L8C5 426 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 KCNK15Q9H427 330 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 TNFRSF19Q9NS68 423 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 IGKV1-12A0A0C4DH73 117 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 C2CD4DB7Z1M9 353 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 IGKV1D-12P01611 117 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 NPPCP23582 126 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 F2RP25116 425 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 LY6DQ14210 128 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 COX19Q49B96 90 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 SAPCD1Q5SSQ6 148 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 YRDCQ86U90 279 aaKnown RBP4.58□□□□□ -1.68
SYNE1-220ENST00000471834 FAM210BQ96KR6 192 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 LYZL4Q96KX0 146 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 NCOR1P1Q9H4R4 102 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 PROCRQ9UNN8 238 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 A0A096LPE4 126 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 A0A1W2PPZ6 126 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 RNF212BA8MTL3 300 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 DHRS3O75911 302 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 IAPPP10997 89 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 HLA-DOBP13765 273 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 CDAP32320 146 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 KLRB1Q12918 225 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 MORN2Q502X0 79 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 OR13H1Q8NG92 308 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 TMEM54Q969K7 222 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 CYYR1Q96J86 154 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 SLC7A10Q9NS82 523 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 KLF13Q9Y2Y9 288 aaPredicted RBP4.58□□□□□ -1.68
SYNE1-220ENST00000471834 SHISA8B8ZZ34 492 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 TIAF1O95411 115 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 ZNF728P0DKX0 622 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 PCBD1P61457 104 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 GLIPR1L1Q6UWM5 242 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 ZNF525Q8N782 197 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 RND1Q92730 232 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 PCGF1Q9BSM1 259 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 MBNL3Q9NUK0 354 aaKnown RBP4.58□□□□□ -1.68
SYNE1-220ENST00000471834 GFOD1Q9NXC2 390 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 SCN3AQ9NY46 2000 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 C5orf49A4QMS7 147 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 SIRPB1O00241 398 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 KITLGP21583 273 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 CD82P27701 267 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 ERVK11-1P61568 191 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 GRB2P62993 217 aaKnown RBP4.58□□□□□ -1.68
SYNE1-220ENST00000471834 TLE4Q04727 773 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 TMEM267Q0VDI3 215 aaPredicted RBP4.58□□□□□ -1.68
SYNE1-220ENST00000471834 OR13C9Q8NGT0 318 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 SF3B5Q9BWJ5 86 aaKnown RBP4.58□□□□□ -1.68
SYNE1-220ENST00000471834 LRRK1Q38SD2 2015 aa4.58□□□□□ -1.68
SYNE1-220ENST00000471834 HTTP42858 3142 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 CRXO43186 299 aaPredicted RBP4.57□□□□□ -1.68
SYNE1-220ENST00000471834 CLEC3BP05452 202 aa4.57□□□□□ -1.68
SYNE1-220ENST00000471834 IGHV4-34P06331 123 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms