RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 Q96M66 194 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 S1PR3Q99500 378 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 P2RX4Q99571 388 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 UQCC2Q9BRT2 126 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 ZNF736B4DX44 427 aaPredicted RBP13.03□□□□□ -0.32
CCDC28B-204ENST00000469003 RCC1P18754 421 aaPredicted RBP13.03□□□□□ -0.32
CCDC28B-204ENST00000469003 MAPK3P27361 379 aaPredicted RBP13.03□□□□□ -0.32
CCDC28B-204ENST00000469003 STEAP3Q658P3 488 aa13.03□□□□□ -0.32
CCDC28B-204ENST00000469003 SIGIRRQ6IA17 410 aa13.03□□□□□ -0.32
CCDC28B-204ENST00000469003 AHSA2Q719I0 299 aa13.03□□□□□ -0.32
CCDC28B-204ENST00000469003 PRR18Q8N4B5 295 aa13.03□□□□□ -0.32
CCDC28B-204ENST00000469003 NANOGP1Q8N7R0 232 aa13.03□□□□□ -0.32
CCDC28B-204ENST00000469003 FBLIM1Q8WUP2 373 aa13.03□□□□□ -0.32
CCDC28B-204ENST00000469003 RASL11BQ9BPW5 248 aa13.03□□□□□ -0.32
CCDC28B-204ENST00000469003 MBNL3Q9NUK0 354 aaKnown RBP13.03□□□□□ -0.32
CCDC28B-204ENST00000469003 TENM3Q9P273 2699 aa13.02□□□□□ -0.32
CCDC28B-204ENST00000469003 UBE2QL1A1L167 161 aa13.02□□□□□ -0.33
CCDC28B-204ENST00000469003 LANCL1O43813 399 aa13.02□□□□□ -0.33
CCDC28B-204ENST00000469003 PDCD6O75340 191 aa13.02□□□□□ -0.33
CCDC28B-204ENST00000469003 VHLP40337 213 aa13.02□□□□□ -0.33
CCDC28B-204ENST00000469003 GPR50Q13585 617 aa13.02□□□□□ -0.33
CCDC28B-204ENST00000469003 ZNF554Q86TJ5 538 aa13.02□□□□□ -0.33
CCDC28B-204ENST00000469003 FAM71E2Q8N5Q1 922 aa13.02□□□□□ -0.33
CCDC28B-204ENST00000469003 RNF152Q8N8N0 203 aa13.02□□□□□ -0.33
CCDC28B-204ENST00000469003 TFAP2CQ92754 450 aa13.02□□□□□ -0.33
CCDC28B-204ENST00000469003 TAF9BQ9HBM6 251 aa13.02□□□□□ -0.33
CCDC28B-204ENST00000469003 OR2S2Q9NQN1 319 aa13.02□□□□□ -0.33
CCDC28B-204ENST00000469003 GHRLQ9UBU3 117 aa13.02□□□□□ -0.33
CCDC28B-204ENST00000469003 H0YHG0 523 aa13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 RRP9O43818 475 aaKnown RBP13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 RPLP1P05386 114 aaKnown RBP13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 F2RL1P55085 397 aa13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 FOXE3Q13461 319 aa13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 MORN2Q502X0 79 aa13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 DEFB121Q5J5C9 76 aa13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 CXorf66Q5JRM2 361 aaPredicted RBP13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 VAX1Q5SQQ9 334 aa13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 OGFRL1Q5TC84 451 aaPredicted RBP13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 BPIFB6Q8NFQ5 453 aa13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 MRPL30Q8TCC3 161 aaKnown RBP13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 RAX2Q96IS3 184 aa13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 CST11Q9H112 138 aa13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 DCLRE1BQ9H816 532 aa13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 FKBP14Q9NWM8 211 aa13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 KCNIP1Q9NZI2 227 aa13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 ERGIC3Q9Y282 383 aa13.01□□□□□ -0.33
CCDC28B-204ENST00000469003 CCL24O00175 119 aa13□□□□□ -0.33
CCDC28B-204ENST00000469003 CASQ2O14958 399 aaPredicted RBP13□□□□□ -0.33
CCDC28B-204ENST00000469003 ELANEP08246 267 aa13□□□□□ -0.33
CCDC28B-204ENST00000469003 UBBP0CG47 229 aa13□□□□□ -0.33
CCDC28B-204ENST00000469003 SOX6P35712 828 aa13□□□□□ -0.33
CCDC28B-204ENST00000469003 CFHR3Q02985 330 aa13□□□□□ -0.33
CCDC28B-204ENST00000469003 LSAMPQ13449 338 aa13□□□□□ -0.33
CCDC28B-204ENST00000469003 UNQ9370/PRO34162Q6UXP9 181 aa13□□□□□ -0.33
CCDC28B-204ENST00000469003 FAM46BQ96A09 425 aa13□□□□□ -0.33
CCDC28B-204ENST00000469003 CYYR1Q96J86 154 aa13□□□□□ -0.33
CCDC28B-204ENST00000469003 DUX3Q96PT4 197 aa13□□□□□ -0.33
CCDC28B-204ENST00000469003 HSPB9Q9BQS6 159 aa13□□□□□ -0.33
CCDC28B-204ENST00000469003 ABHD14AQ9BUJ0 271 aa13□□□□□ -0.33
CCDC28B-204ENST00000469003 ZNF580Q9UK33 172 aa13□□□□□ -0.33
CCDC28B-204ENST00000469003 JPT1Q9UK76 154 aa13□□□□□ -0.33
CCDC28B-204ENST00000469003 IGHG4P01861 327 aa12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 VSIG8P0DPA2 414 aa12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 VDAC1P21796 283 aa12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 CDX1P47902 265 aaPredicted RBP12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 GP2P55259 537 aaKnown RBP12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 HTD2P86397 168 aa12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 GNMTQ14749 295 aa12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 KIR2DS1Q14954 304 aa12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 ACSM3Q53FZ2 586 aa12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 LY6G6FQ5SQ64 297 aa12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 C6orf141Q5SZD1 244 aa12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 RNLSQ5VYX0 342 aa12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 LCNL1Q6ZST4 164 aa12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 MS4A15Q8N5U1 240 aa12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 OR52L2PQ8NGH6 319 aa12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 OR8U1Q8NH10 309 aa12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 RBMXL1Q96E39 390 aaKnown RBP12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 ZMAT5Q9UDW3 170 aaKnown RBP12.99□□□□□ -0.33
CCDC28B-204ENST00000469003 YPEL1O60688 119 aa12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 IGF1P05019 195 aa12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 CDK1P06493 297 aa12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 CHATP28329 748 aa12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 PPP1CCP36873 323 aaKnown RBP12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 GABPB1Q06547 395 aaPredicted RBP12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 INSL4Q14641 139 aa12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 NKAPLQ5M9Q1 402 aa12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 GLT8D1Q68CQ7 371 aa12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 LRRTM1Q86UE6 522 aa12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 ODF3L1Q8IXM7 274 aa12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 PHYHIPQ92561 330 aa12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 NEDD4LQ96PU5 975 aa12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 YPEL2Q96QA6 119 aa12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 MND1Q9BWT6 205 aa12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 ZNF107Q9UII5 783 aaPredicted RBP12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 LRRC42Q9Y546 428 aa12.98□□□□□ -0.33
CCDC28B-204ENST00000469003 RGS11O94810 467 aa12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 OR5H8P0DN80 308 aa12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 RAB25P57735 213 aa12.97□□□□□ -0.33
CCDC28B-204ENST00000469003 DCTN2Q13561 401 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 116.2 ms