RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ACTL6AO96019 429 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 MT-CO3P00414 261 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 IL4P05112 153 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 LYZP61626 148 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 VAX1Q5SQQ9 334 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 LINC00596Q86U02 117 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 BEND2Q8NDZ0 799 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 PCOLCE2Q9UKZ9 415 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 LOC105371267A0A1B0GV96 52 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 PITX3O75364 302 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 CXCL2P19875 107 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 PRSS12P56730 875 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 COPS9Q8WXC6 57 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 MRGPRFQ96AM1 343 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 SLC25A33Q9BSK2 321 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 RCC2Q9P258 522 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 WNT16Q9UBV4 365 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 PRNDQ9UKY0 176 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 SIRT4Q9Y6E7 314 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 C3orf80F5H4A9 247 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 SMPD2O60906 423 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 FSTP19883 344 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 HOXA6P31267 233 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 C16orf82Q7Z2V1 217 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 H1FOOQ8IZA3 346 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 OR2H1Q9GZK4 316 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 ABCA3Q99758 1704 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 ZNF716A6NP11 495 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 RPL36A-HNRNPH2H7BZ11 118 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 K7ESF4 209 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 KCNAB3O43448 404 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 P01737 135 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 CD74P04233 296 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 VSIG10L2P0DP72 767 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 SRP14P37108 136 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 OR1L1Q8NH94 360 aa8.97□□□□□ -0.97
LIMCH1-203ENST00000396595 TRGC2P03986 189 aa8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 NANOS3P60323 173 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 DOLPP1Q86YN1 238 aa8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 C5orf17Q8NAS9 161 aa8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 STXBP6Q8NFX7 210 aa8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 NRTNQ99748 197 aa8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 NCOR1P1Q9H4R4 102 aa8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 KLK13Q9UKR3 277 aa8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 TRAV38-1A0A0B4J264 116 aa8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 A0A1W2PPC1 479 aa8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 CXorf1O96002 111 aa8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 TMEM50BP56557 158 aa8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 MGAT2Q10469 447 aa8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 OR1B1Q8NGR6 318 aa8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 FBLIM1Q8WUP2 373 aa8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 TPRP12270 2363 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-203ENST00000396595 LINC00587B1AMM8 73 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 HRKO00198 91 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 FAM157CP0CG43 387 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 SERF2P84101 59 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 GAMTQ14353 236 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 PTPMT1Q8WUK0 201 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 SSMEM1Q8WWF3 244 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 CCL17Q92583 94 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 HLA-DQB1P01920 261 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 MMP9P14780 707 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 COL8A1P27658 744 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 KIR3DL2P43630 455 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 TUSC5Q8IXB3 177 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 ZNF729A6NN14 1252 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 TNXAQ16473 311 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 ZDHHC16Q969W1 377 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 PERPQ96FX8 193 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 TMEM38BQ9NVV0 291 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 WIPI2Q9Y4P8 454 aa8.96□□□□□ -0.98
LIMCH1-203ENST00000396595 TRPM6Q9BX84 2022 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 TRIP11Q15643 1979 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 DOCK1Q14185 1865 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 A0A1B0GW15 77 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 MS4A18H0YCH9 400 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 PNLIPP16233 465 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 COX7A1P24310 79 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 MS4A18Q3C1V0 323 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 TMEM255AQ5JRV8 349 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 ZNF519Q8TB69 540 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 CHRNA10Q9GZZ6 450 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 GPR35Q9HC97 309 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 ZFC3H1O60293 1989 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 CDIPTO14735 213 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 BCL2P10415 239 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 PIGYQ3MUY2 71 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 C1orf185Q5T7R7 199 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 ZNF784Q8NCA9 323 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 ZNF418Q8TF45 676 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 PGLYRP3Q96LB9 341 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 GUCD1Q96NT3 240 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 PRSS27Q9BQR3 290 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 LHX9Q9NQ69 397 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 METTL1Q9UBP6 276 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 SRSF10O75494 262 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 MUC1P15941 1255 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 ACP1P24666 158 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 DCAF12L2Q5VW00 463 aa8.95□□□□□ -0.98
LIMCH1-203ENST00000396595 RGP1Q92546 391 aaPredicted RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms