RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 LMO1P25800 156 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 FOXF2Q12947 444 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 ZNF266Q14584 549 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 IGFBP7Q16270 282 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 ZNF718Q3SXZ3 478 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 BEND4Q6ZU67 534 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 CXorf67Q86X51 503 aaPredicted RBP18.17■□□□□ 0.5
TRIM54-202ENST00000380075 COMMD1Q8N668 190 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 IL1F10Q8WWZ1 152 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 WFDC1Q9HC57 220 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 TREM1Q9NP99 234 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 LYRM2Q9NU23 88 aaPredicted RBP18.17■□□□□ 0.5
TRIM54-202ENST00000380075 TINAGQ9UJW2 476 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 VAMP2P63027 116 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 MZT1Q08AG7 82 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 MBNL2Q5VZF2 373 aaKnown RBP18.17■□□□□ 0.5
TRIM54-202ENST00000380075 ATRAIDQ6UW56 229 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 GFRALQ6UXV0 394 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 STARD4Q96DR4 205 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 SEC11CQ9BY50 192 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 UQCC1Q9NVA1 299 aa18.17■□□□□ 0.5
TRIM54-202ENST00000380075 SVILO95425 2214 aa18.16■□□□□ 0.5
TRIM54-202ENST00000380075 H0YL77 283 aa18.16■□□□□ 0.5
TRIM54-202ENST00000380075 MLNRO43193 412 aa18.16■□□□□ 0.5
TRIM54-202ENST00000380075 TIMM8AO60220 97 aaPredicted RBP18.16■□□□□ 0.5
TRIM54-202ENST00000380075 PITX3O75364 302 aa18.16■□□□□ 0.5
TRIM54-202ENST00000380075 SERPINE2P07093 398 aa18.16■□□□□ 0.5
TRIM54-202ENST00000380075 DANCRP0C864 163 aa18.16■□□□□ 0.5
TRIM54-202ENST00000380075 BAXQ07812 192 aa18.16■□□□□ 0.5
TRIM54-202ENST00000380075 Q6ZRG5 221 aa18.16■□□□□ 0.5
TRIM54-202ENST00000380075 BHLHA15Q7RTS1 189 aaPredicted RBP18.16■□□□□ 0.5
TRIM54-202ENST00000380075 BSCL2Q96G97 398 aaPredicted RBP18.16■□□□□ 0.5
TRIM54-202ENST00000380075 OR1A1Q9P1Q5 309 aa18.16■□□□□ 0.5
TRIM54-202ENST00000380075 STRAPQ9Y3F4 350 aaKnown RBP18.16■□□□□ 0.5
TRIM54-202ENST00000380075 DOCK7Q96N67 2140 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 ZNF462Q96JM2 2506 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 A0A1B0GU03 582 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 TMEM30CPA0ZSE6 113 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 OR5H1A6NKK0 313 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 TSPAN4O14817 238 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 HSPA12AO43301 675 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 GCH1P30793 250 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 POLR2GP62487 172 aaKnown RBP eCLIP18.15■□□□□ 0.5
TRIM54-202ENST00000380075 NHLH2Q02577 135 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 TESK1Q15569 626 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 ZNF610Q8N9Z0 462 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 PRR7Q8TB68 274 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 KCNIP1Q9NZI2 227 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 PLA2G2EQ9NZK7 142 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 A0A1B0GWJ7 208 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 F8W036 122 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 TNFSF12O43508 249 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 HEXAP06865 529 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 CD200P41217 278 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 ST6GALNAC3Q8NDV1 305 aa18.15■□□□□ 0.5
TRIM54-202ENST00000380075 LSM10Q969L4 123 aaKnown RBP18.15■□□□□ 0.5
TRIM54-202ENST00000380075 IGHV2OR16-5A0A0B4J2B6 119 aa18.14■□□□□ 0.49
TRIM54-202ENST00000380075 ADCYAP1P18509 176 aa18.14■□□□□ 0.49
TRIM54-202ENST00000380075 AKR1C2P52895 323 aa18.14■□□□□ 0.49
TRIM54-202ENST00000380075 AKR1C1Q04828 323 aa18.14■□□□□ 0.49
TRIM54-202ENST00000380075 SLC35E4Q6ICL7 350 aa18.14■□□□□ 0.49
TRIM54-202ENST00000380075 CLEC9AQ6UXN8 241 aa18.14■□□□□ 0.49
TRIM54-202ENST00000380075 C11orf53Q8IXP5 236 aa18.14■□□□□ 0.49
TRIM54-202ENST00000380075 LIN7CQ9NUP9 197 aaKnown RBP18.14■□□□□ 0.49
TRIM54-202ENST00000380075 NBASA2RRP1 2371 aa18.14■□□□□ 0.49
TRIM54-202ENST00000380075 C3orf80F5H4A9 247 aa18.13■□□□□ 0.49
TRIM54-202ENST00000380075 DNASE2O00115 360 aaPredicted RBP18.13■□□□□ 0.49
TRIM54-202ENST00000380075 WRBO00258 174 aa18.13■□□□□ 0.49
TRIM54-202ENST00000380075 SSSCA1O60232 199 aa18.13■□□□□ 0.49
TRIM54-202ENST00000380075 CXorf66Q5JRM2 361 aaPredicted RBP18.13■□□□□ 0.49
TRIM54-202ENST00000380075 TMEM252Q8N6L7 170 aa18.13■□□□□ 0.49
TRIM54-202ENST00000380075 GPHA2Q96T91 129 aa18.13■□□□□ 0.49
TRIM54-202ENST00000380075 OPN3Q9H1Y3 402 aaPredicted RBP18.13■□□□□ 0.49
TRIM54-202ENST00000380075 IGHV1-18A0A0C4DH31 117 aa18.13■□□□□ 0.49
TRIM54-202ENST00000380075 FAM24AA6NFZ4 105 aa18.13■□□□□ 0.49
TRIM54-202ENST00000380075 CD5P06127 495 aa18.13■□□□□ 0.49
TRIM54-202ENST00000380075 MUC1P15941 1255 aaPredicted RBP18.13■□□□□ 0.49
TRIM54-202ENST00000380075 SRSF3P84103 164 aaKnown RBP18.13■□□□□ 0.49
TRIM54-202ENST00000380075 ESPL1Q14674 2120 aa18.13■□□□□ 0.49
TRIM54-202ENST00000380075 ACP7Q6ZNF0 438 aa18.13■□□□□ 0.49
TRIM54-202ENST00000380075 OR51H1Q8NH63 302 aa18.13■□□□□ 0.49
TRIM54-202ENST00000380075 RBM7Q9Y580 266 aaKnown RBP18.13■□□□□ 0.49
TRIM54-202ENST00000380075 IGSF23A1L1A6 192 aa18.12■□□□□ 0.49
TRIM54-202ENST00000380075 RNF212BA8MTL3 300 aa18.12■□□□□ 0.49
TRIM54-202ENST00000380075 RNASEK-C17orf49H0YIS7 233 aa18.12■□□□□ 0.49
TRIM54-202ENST00000380075 TRIM77I1YAP6 450 aa18.12■□□□□ 0.49
TRIM54-202ENST00000380075 IFNL4K9M1U5 179 aa18.12■□□□□ 0.49
TRIM54-202ENST00000380075 IGLV2-14P01704 120 aa18.12■□□□□ 0.49
TRIM54-202ENST00000380075 ZBTB34Q8NCN2 500 aa18.12■□□□□ 0.49
TRIM54-202ENST00000380075 SLC25A15Q9Y619 301 aa18.12■□□□□ 0.49
TRIM54-202ENST00000380075 A6NLC8 198 aa18.11■□□□□ 0.49
TRIM54-202ENST00000380075 SIGLEC5O15389 551 aa18.11■□□□□ 0.49
TRIM54-202ENST00000380075 SNAPINO95295 136 aa18.11■□□□□ 0.49
TRIM54-202ENST00000380075 PSG2P11465 335 aa18.11■□□□□ 0.49
TRIM54-202ENST00000380075 DVL1P1P54792 670 aaPredicted RBP18.11■□□□□ 0.49
TRIM54-202ENST00000380075 C3orf36Q3SXR2 165 aa18.11■□□□□ 0.49
TRIM54-202ENST00000380075 WDR82Q6UXN9 313 aa18.11■□□□□ 0.49
TRIM54-202ENST00000380075 SEM1Q6ZVN7 128 aa18.11■□□□□ 0.49
TRIM54-202ENST00000380075 PUSL1Q8N0Z8 303 aaKnown RBP18.11■□□□□ 0.49
TRIM54-202ENST00000380075 TOLLIPQ9H0E2 274 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms