RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 TRBV6-6A0A0A6YYG2 114 aa13.12□□□□□ -0.31
CCDC40-202ENST00000374876 DNASE2O00115 360 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-202ENST00000374876 SMPD2O60906 423 aa13.12□□□□□ -0.31
CCDC40-202ENST00000374876 ADCYAP1P18509 176 aa13.12□□□□□ -0.31
CCDC40-202ENST00000374876 CAV2P51636 162 aa13.12□□□□□ -0.31
CCDC40-202ENST00000374876 P2RY6Q15077 328 aa13.12□□□□□ -0.31
CCDC40-202ENST00000374876 ALKBH2Q6NS38 261 aa13.12□□□□□ -0.31
CCDC40-202ENST00000374876 OR10J5Q8NHC4 309 aa13.12□□□□□ -0.31
CCDC40-202ENST00000374876 S100PBPQ96BU1 408 aa13.12□□□□□ -0.31
CCDC40-202ENST00000374876 BSCL2Q96G97 398 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-202ENST00000374876 USB1Q9BQ65 265 aaKnown RBP13.12□□□□□ -0.31
CCDC40-202ENST00000374876 OR2J1Q9GZK6 312 aa13.12□□□□□ -0.31
CCDC40-202ENST00000374876 IFT22Q9H7X7 185 aa13.12□□□□□ -0.31
CCDC40-202ENST00000374876 PARP11Q9NR21 331 aa13.12□□□□□ -0.31
CCDC40-202ENST00000374876 CCL28Q9NRJ3 127 aa13.12□□□□□ -0.31
CCDC40-202ENST00000374876 FAM212BQ9NTI7 297 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-202ENST00000374876 PRR14LQ5THK1 2151 aa13.11□□□□□ -0.31
CCDC40-202ENST00000374876 LRP5LA4QPB2 252 aa13.11□□□□□ -0.31
CCDC40-202ENST00000374876 CNOT4O95628 575 aaKnown RBP13.11□□□□□ -0.31
CCDC40-202ENST00000374876 S100GP29377 79 aa13.11□□□□□ -0.31
CCDC40-202ENST00000374876 BHLHA15Q7RTS1 189 aaPredicted RBP13.11□□□□□ -0.31
CCDC40-202ENST00000374876 SELENOHQ8IZQ5 122 aaKnown RBP13.11□□□□□ -0.31
CCDC40-202ENST00000374876 GPHA2Q96T91 129 aa13.11□□□□□ -0.31
CCDC40-202ENST00000374876 UQCC1Q9NVA1 299 aa13.11□□□□□ -0.31
CCDC40-202ENST00000374876 ZDHHC8Q9ULC8 765 aa13.11□□□□□ -0.31
CCDC40-202ENST00000374876 C3orf80F5H4A9 247 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 NKX2-1P43699 371 aaPredicted RBP13.1□□□□□ -0.31
CCDC40-202ENST00000374876 F2RL1P55085 397 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 HLA-DRB3P79483 266 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 Q6ZRG5 221 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 Q8IYB0 196 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 DMBX1Q8NFW5 382 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 KIRREL1Q96J84 757 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 ARV1Q9H2C2 271 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 NDRG3Q9UGV2 375 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 POLDIP2Q9Y2S7 368 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 FAM96BQ9Y3D0 163 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 FAM74A7A6NL05 159 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 PVALBP20472 110 aaPredicted RBP13.1□□□□□ -0.31
CCDC40-202ENST00000374876 COX5AP20674 150 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 NHLH2Q02577 135 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 GUCA2BQ16661 112 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 FAM74A3Q4VXF1 159 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 C10orf91Q5T1B1 145 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 BTNL8Q6UX41 500 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 SPAG16Q8N0X2 631 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 PUSL1Q8N0Z8 303 aaKnown RBP13.1□□□□□ -0.31
CCDC40-202ENST00000374876 SCCPDHQ8NBX0 429 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 ADAT1Q9BUB4 502 aaKnown RBP13.1□□□□□ -0.31
CCDC40-202ENST00000374876 WFDC1Q9HC57 220 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 PLA2G2EQ9NZK7 142 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 CARHSP1Q9Y2V2 147 aaKnown RBP13.1□□□□□ -0.31
CCDC40-202ENST00000374876 OR2W1Q9Y3N9 320 aa13.1□□□□□ -0.31
CCDC40-202ENST00000374876 FLNBO75369 2602 aaKnown RBP13.1□□□□□ -0.31
CCDC40-202ENST00000374876 DUXBA0A1W2PPF3 345 aa13.09□□□□□ -0.31
CCDC40-202ENST00000374876 ADAM20O43506 726 aa13.09□□□□□ -0.31
CCDC40-202ENST00000374876 TNFSF12O43508 249 aa13.09□□□□□ -0.31
CCDC40-202ENST00000374876 SEC11BP0C7V7 166 aa13.09□□□□□ -0.31
CCDC40-202ENST00000374876 MUC1P15941 1255 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-202ENST00000374876 UCP1P25874 307 aa13.09□□□□□ -0.31
CCDC40-202ENST00000374876 MDH2P40926 338 aaKnown RBP13.09□□□□□ -0.31
CCDC40-202ENST00000374876 ERVS71-1P61550 626 aa13.09□□□□□ -0.31
CCDC40-202ENST00000374876 SMUG1Q53HV7 270 aa13.09□□□□□ -0.31
CCDC40-202ENST00000374876 Q6P435 159 aa13.09□□□□□ -0.31
CCDC40-202ENST00000374876 ZNF880Q6PDB4 577 aa13.09□□□□□ -0.31
CCDC40-202ENST00000374876 WDR86Q86TI4 376 aa13.09□□□□□ -0.31
CCDC40-202ENST00000374876 SLC25A40Q8TBP6 338 aa13.09□□□□□ -0.31
CCDC40-202ENST00000374876 IL1F10Q8WWZ1 152 aa13.09□□□□□ -0.31
CCDC40-202ENST00000374876 SEC11CQ9BY50 192 aa13.09□□□□□ -0.31
CCDC40-202ENST00000374876 H0Y980 276 aa13.08□□□□□ -0.31
CCDC40-202ENST00000374876 AGPAT2O15120 278 aa13.08□□□□□ -0.31
CCDC40-202ENST00000374876 PGLYRP1O75594 196 aaPredicted RBP13.08□□□□□ -0.31
CCDC40-202ENST00000374876 THBDP07204 575 aa13.08□□□□□ -0.31
CCDC40-202ENST00000374876 RAC2P15153 192 aa13.08□□□□□ -0.31
CCDC40-202ENST00000374876 VDAC1P21796 283 aa13.08□□□□□ -0.31
CCDC40-202ENST00000374876 GABRA6Q16445 453 aa13.08□□□□□ -0.31
CCDC40-202ENST00000374876 FAM76BQ5HYJ3 339 aa13.08□□□□□ -0.31
CCDC40-202ENST00000374876 OR2C3Q8N628 320 aa13.08□□□□□ -0.31
CCDC40-202ENST00000374876 OR5D13Q8NGL4 314 aa13.08□□□□□ -0.31
CCDC40-202ENST00000374876 OR1J1Q8NGS3 322 aa13.08□□□□□ -0.31
CCDC40-202ENST00000374876 LILRB1Q8NHL6 650 aaPredicted RBP13.08□□□□□ -0.31
CCDC40-202ENST00000374876 BOD1Q96IK1 185 aa13.08□□□□□ -0.31
CCDC40-202ENST00000374876 GINS3Q9BRX5 216 aa13.08□□□□□ -0.31
CCDC40-202ENST00000374876 TLNRD1Q9H1K6 362 aa13.08□□□□□ -0.31
CCDC40-202ENST00000374876 CELSR2Q9HCU4 2923 aa13.08□□□□□ -0.32
CCDC40-202ENST00000374876 RNASEK-C17orf49H0YIS7 233 aa13.08□□□□□ -0.32
CCDC40-202ENST00000374876 SIRPB1O00241 398 aa13.08□□□□□ -0.32
CCDC40-202ENST00000374876 HOXC12P31275 282 aa13.08□□□□□ -0.32
CCDC40-202ENST00000374876 UCP2P55851 309 aa13.08□□□□□ -0.32
CCDC40-202ENST00000374876 POLR2GP62487 172 aaKnown RBP eCLIP13.08□□□□□ -0.32
CCDC40-202ENST00000374876 EWSR1Q01844 656 aaKnown RBP eCLIP13.08□□□□□ -0.32
CCDC40-202ENST00000374876 H1FOOQ8IZA3 346 aaPredicted RBP13.08□□□□□ -0.32
CCDC40-202ENST00000374876 ZNF295-AS1Q8N0V1 137 aa13.08□□□□□ -0.32
CCDC40-202ENST00000374876 NRIP2Q9BQI9 281 aa13.08□□□□□ -0.32
CCDC40-202ENST00000374876 CABLES2Q9BTV7 478 aa13.08□□□□□ -0.32
CCDC40-202ENST00000374876 PARP12Q9H0J9 701 aaKnown RBP13.08□□□□□ -0.32
CCDC40-202ENST00000374876 CENPEQ02224 2701 aa13.08□□□□□ -0.32
CCDC40-202ENST00000374876 ANKHD1Q8IWZ3 2542 aaKnown RBP13.08□□□□□ -0.32
CCDC40-202ENST00000374876 ASH1LQ9NR48 2969 aaKnown RBP13.07□□□□□ -0.32
CCDC40-202ENST00000374876 CDIPTO14735 213 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms