RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 HTD2P86397 168 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 DHODHQ02127 395 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 MEF2CQ06413 473 aaPredicted RBP15.37■□□□□ 0.05
CLN3-206ENST00000360019 CD300CQ08708 224 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 LTC4SQ16873 150 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 TMEM128Q5BJH2 165 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 SLC38A6Q8IZM9 456 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 ZFAND1Q8TCF1 268 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 SECTM1Q8WVN6 248 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 PSMG3-AS1Q96PY0 264 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 RSRP1Q9BUV0 290 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 TOLLIPQ9H0E2 274 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 OR2S2Q9NQN1 319 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 CLN8Q9UBY8 286 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 C14orf166Q9Y224 244 aaKnown RBP15.37■□□□□ 0.05
CLN3-206ENST00000360019 LINC00312Q9Y6C7 94 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 ARID1AO14497 2285 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 HLA-AP01891 365 aaKnown RBP15.36■□□□□ 0.05
CLN3-206ENST00000360019 WNT2P09544 360 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 TRAPPC2P0DI81 140 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 TRAPPC2BP0DI82 140 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 GNRHRP30968 328 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 PPP1CCP36873 323 aaKnown RBP15.36■□□□□ 0.05
CLN3-206ENST00000360019 UBE2MP61081 183 aaKnown RBP15.36■□□□□ 0.05
CLN3-206ENST00000360019 TMEM200BQ69YZ2 307 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 SPICQ8N5J4 248 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 ZNF431Q8TF32 576 aaPredicted RBP15.36■□□□□ 0.05
CLN3-206ENST00000360019 MIOXQ9UGB7 285 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 ABCA12Q86UK0 2595 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 POLQO75417 2590 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 C9orf170A2RU37 121 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 LOXL3P58215 753 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 SUPT4H1P63272 117 aaKnown RBP15.36■□□□□ 0.05
CLN3-206ENST00000360019 FCN2Q15485 313 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 LYG2Q86SG7 212 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 OR10V1Q8NGI7 309 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 NEIL1Q96FI4 390 aaPredicted RBP15.36■□□□□ 0.05
CLN3-206ENST00000360019 MED28Q9H204 178 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 NARFLQ9H6Q4 476 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 LINC00574Q9H8X3 128 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 SLC2A9Q9NRM0 540 aa15.36■□□□□ 0.05
CLN3-206ENST00000360019 UBE2J1Q9Y385 318 aaPredicted RBP15.36■□□□□ 0.05
CLN3-206ENST00000360019 ZNF729A6NN14 1252 aaPredicted RBP15.35■□□□□ 0.05
CLN3-206ENST00000360019 SSNA1O43805 119 aa15.35■□□□□ 0.05
CLN3-206ENST00000360019 PIGPP57054 158 aa15.35■□□□□ 0.05
CLN3-206ENST00000360019 ZNF818PQ6ZRF7 136 aa15.35■□□□□ 0.05
CLN3-206ENST00000360019 OR8B3Q8NGG8 313 aa15.35■□□□□ 0.05
CLN3-206ENST00000360019 NINJ1Q92982 152 aa15.35■□□□□ 0.05
CLN3-206ENST00000360019 OR8B2Q96RD0 313 aa15.35■□□□□ 0.05
CLN3-206ENST00000360019 SLC5A7Q9GZV3 580 aa15.35■□□□□ 0.05
CLN3-206ENST00000360019 CCL28Q9NRJ3 127 aa15.35■□□□□ 0.05
CLN3-206ENST00000360019 JPT1Q9UK76 154 aa15.35■□□□□ 0.05
CLN3-206ENST00000360019 DOCK11Q5JSL3 2073 aa15.34■□□□□ 0.05
CLN3-206ENST00000360019 CCL3L1P16619 93 aa15.34■□□□□ 0.05
CLN3-206ENST00000360019 VAMP1P23763 118 aa15.34■□□□□ 0.05
CLN3-206ENST00000360019 PHLDA2Q53GA4 152 aa15.34■□□□□ 0.05
CLN3-206ENST00000360019 CD276Q5ZPR3 534 aa15.34■□□□□ 0.05
CLN3-206ENST00000360019 ZNF787Q6DD87 383 aa15.34■□□□□ 0.05
CLN3-206ENST00000360019 NLRC3Q7RTR2 1065 aa15.34■□□□□ 0.05
CLN3-206ENST00000360019 AKAP14Q86UN6 197 aa15.34■□□□□ 0.05
CLN3-206ENST00000360019 OR11H7Q8NGC8 314 aa15.34■□□□□ 0.05
CLN3-206ENST00000360019 PATZ1Q9HBE1 687 aaKnown RBP15.34■□□□□ 0.05
CLN3-206ENST00000360019 A8MV72 311 aaPredicted RBP15.33■□□□□ 0.05
CLN3-206ENST00000360019 F5H0A9 414 aaPredicted RBP15.33■□□□□ 0.05
CLN3-206ENST00000360019 HSD17B6O14756 317 aa15.33■□□□□ 0.05
CLN3-206ENST00000360019 MMP23AO75900 390 aa15.33■□□□□ 0.05
CLN3-206ENST00000360019 OR8U9P0C7N5 309 aa15.33■□□□□ 0.05
CLN3-206ENST00000360019 CXCL3P19876 107 aa15.33■□□□□ 0.05
CLN3-206ENST00000360019 LUMP51884 338 aaPredicted RBP15.33■□□□□ 0.05
CLN3-206ENST00000360019 KRTAP10-9P60411 292 aa15.33■□□□□ 0.05
CLN3-206ENST00000360019 ABCA11PQ4W5N1 156 aa15.33■□□□□ 0.05
CLN3-206ENST00000360019 UTF1Q5T230 341 aa15.33■□□□□ 0.05
CLN3-206ENST00000360019 WDR25Q64LD2 544 aaPredicted RBP15.33■□□□□ 0.05
CLN3-206ENST00000360019 LPCAT3Q6P1A2 487 aa15.33■□□□□ 0.05
CLN3-206ENST00000360019 FAM185AQ8N0U4 392 aa15.33■□□□□ 0.05
CLN3-206ENST00000360019 OR8U1Q8NH10 309 aa15.33■□□□□ 0.05
CLN3-206ENST00000360019 ZNF486Q96H40 463 aaPredicted RBP15.33■□□□□ 0.05
CLN3-206ENST00000360019 BPESC1Q9GZL8 116 aa15.33■□□□□ 0.05
CLN3-206ENST00000360019 TAS2R3Q9NYW6 316 aa15.33■□□□□ 0.05
CLN3-206ENST00000360019 LPAR3Q9UBY5 353 aa15.33■□□□□ 0.05
CLN3-206ENST00000360019 TRBV23-1A0A0A0MS06 115 aa15.33■□□□□ 0.04
CLN3-206ENST00000360019 CRYM-AS1A6NIL9 109 aa15.33■□□□□ 0.04
CLN3-206ENST00000360019 SFT2D2O95562 160 aa15.33■□□□□ 0.04
CLN3-206ENST00000360019 IGLV2-14P01704 120 aa15.33■□□□□ 0.04
CLN3-206ENST00000360019 SULT1A3P0DMM9 295 aa15.33■□□□□ 0.04
CLN3-206ENST00000360019 SULT1A4P0DMN0 295 aa15.33■□□□□ 0.04
CLN3-206ENST00000360019 ERVFRD-1P60508 538 aa15.33■□□□□ 0.04
CLN3-206ENST00000360019 RTN4IP1Q8WWV3 396 aaPredicted RBP15.33■□□□□ 0.04
CLN3-206ENST00000360019 ZNF714Q96N38 554 aa15.33■□□□□ 0.04
CLN3-206ENST00000360019 RAB9BQ9NP90 201 aa15.33■□□□□ 0.04
CLN3-206ENST00000360019 GNG12Q9UBI6 72 aa15.33■□□□□ 0.04
CLN3-206ENST00000360019 CSMD1Q96PZ7 3565 aa15.32■□□□□ 0.04
CLN3-206ENST00000360019 GPR31O00270 319 aa15.32■□□□□ 0.04
CLN3-206ENST00000360019 CCNKO75909 580 aa15.32■□□□□ 0.04
CLN3-206ENST00000360019 MORN2Q502X0 79 aa15.32■□□□□ 0.04
CLN3-206ENST00000360019 PRAMEF5Q5TYX0 476 aa15.32■□□□□ 0.04
CLN3-206ENST00000360019 CASTOR1Q8WTX7 329 aa15.32■□□□□ 0.04
CLN3-206ENST00000360019 MITD1Q8WV92 249 aa15.32■□□□□ 0.04
CLN3-206ENST00000360019 GAL3ST2Q9H3Q3 398 aa15.32■□□□□ 0.04
CLN3-206ENST00000360019 IDI2-AS1Q9NZ38 188 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms