RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 VSIRQ9H7M9 311 aa18.68■□□□□ 0.58
SHMT1-201ENST00000316694 COLQQ9Y215 455 aaPredicted RBP18.68■□□□□ 0.58
SHMT1-201ENST00000316694 DEGS1O15121 323 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 HOXA5P20719 270 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 ZXDAP98168 799 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 SLC35E3Q7Z769 313 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 ZNF610Q8N9Z0 462 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 DOK5Q9P104 306 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 TRBV6-6A0A0A6YYG2 114 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 IGKV1-39P01597 117 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 IGKV1D-39P04432 117 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 WNT5AP41221 380 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 GLIPR1P48060 266 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 FGF8P55075 233 aaPredicted RBP18.67■□□□□ 0.58
SHMT1-201ENST00000316694 RNPS1Q15287 305 aaKnown RBP18.67■□□□□ 0.58
SHMT1-201ENST00000316694 ABHD17BQ5VST6 288 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 GGACTQ9BVM4 153 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 ZNF665Q9H7R5 613 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 PLA2G3Q9NZ20 509 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 KCNS2Q9ULS6 477 aa18.67■□□□□ 0.58
SHMT1-201ENST00000316694 SYNGR2O43760 224 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 APLNRP35414 380 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 CD200P41217 278 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 ZNF787Q6DD87 383 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 C1orf210Q8IVY1 113 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 PSENENQ9NZ42 101 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 MED12LQ86YW9 2145 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 C19orf67A6NJJ6 358 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 OR5B21A6NL26 309 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 SLC25A6P12236 298 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 FAM209BQ5JX69 171 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 NUFIP2Q7Z417 695 aaKnown RBP18.66■□□□□ 0.58
SHMT1-201ENST00000316694 CABLES2Q9BTV7 478 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 TTTY12Q9BZ98 90 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 SIRT7Q9NRC8 400 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 RYDENQ9NUL5 291 aaKnown RBP18.66■□□□□ 0.58
SHMT1-201ENST00000316694 MPC1Q9Y5U8 109 aa18.66■□□□□ 0.58
SHMT1-201ENST00000316694 IFITM10A6NMD0 228 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 SIRPB1O00241 398 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 ARL16Q0P5N6 197 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 ZNF880Q6PDB4 577 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 VASH2Q86V25 355 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 EDARADDQ8WWZ3 215 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 DIDO1Q9BTC0 2240 aaKnown RBP18.65■□□□□ 0.58
SHMT1-201ENST00000316694 C12orf49Q9H741 205 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 COL27A1Q8IZC6 1860 aaPredicted RBP18.65■□□□□ 0.58
SHMT1-201ENST00000316694 TRAV1-1A0A0B4J248 108 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 CXorf65A6NEN9 183 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 IGLV2-14P01704 120 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 OR1C1Q15619 314 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 LINC00696Q6ZRV3 163 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 MCEMP1Q8IX19 187 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 HIPK2Q9H2X6 1198 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 OPA3Q9H6K4 179 aa18.65■□□□□ 0.58
SHMT1-201ENST00000316694 IGKV1-5P01602 117 aa18.64■□□□□ 0.58
SHMT1-201ENST00000316694 RD3LP0DJH9 198 aa18.64■□□□□ 0.58
SHMT1-201ENST00000316694 CDX1P47902 265 aaPredicted RBP18.64■□□□□ 0.58
SHMT1-201ENST00000316694 PLGLB1Q02325 96 aa18.64■□□□□ 0.58
SHMT1-201ENST00000316694 TESK1Q15569 626 aa18.64■□□□□ 0.58
SHMT1-201ENST00000316694 LILRB2Q8N423 598 aa18.64■□□□□ 0.58
SHMT1-201ENST00000316694 OR1K1Q8NGR3 316 aa18.64■□□□□ 0.58
SHMT1-201ENST00000316694 PRSS50Q9UI38 385 aa18.64■□□□□ 0.58
SHMT1-201ENST00000316694 URB1O60287 2271 aaKnown RBP18.64■□□□□ 0.57
SHMT1-201ENST00000316694 KNTC1P50748 2209 aa18.64■□□□□ 0.57
SHMT1-201ENST00000316694 TRBV23-1A0A0A0MS06 115 aa18.64■□□□□ 0.57
SHMT1-201ENST00000316694 WDR1O75083 606 aa18.64■□□□□ 0.57
SHMT1-201ENST00000316694 IGHV2-70P01814 119 aa18.64■□□□□ 0.57
SHMT1-201ENST00000316694 BCL2P10415 239 aa18.64■□□□□ 0.57
SHMT1-201ENST00000316694 ACP1P24666 158 aa18.64■□□□□ 0.57
SHMT1-201ENST00000316694 SSX7Q7RTT5 188 aa18.64■□□□□ 0.57
SHMT1-201ENST00000316694 GUCD1Q96NT3 240 aa18.64■□□□□ 0.57
SHMT1-201ENST00000316694 OR51I2Q9H344 312 aa18.64■□□□□ 0.57
SHMT1-201ENST00000316694 TRAPPC2LQ9UL33 140 aa18.64■□□□□ 0.57
SHMT1-201ENST00000316694 KIAA2026Q5HYC2 2103 aa18.64■□□□□ 0.57
SHMT1-201ENST00000316694 GPR179Q6PRD1 2367 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 PIGBOS1A0A0B4J2F0 54 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 TRGC2P03986 189 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 S100A2P29034 98 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 CLN3Q13286 438 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 ZNF726P1Q15940 193 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 FAM90A2PQ658T7 463 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 SPNS3Q6ZMD2 512 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 MYPOPQ86VE0 399 aaPredicted RBP18.63■□□□□ 0.57
SHMT1-201ENST00000316694 ZNF525Q8N782 197 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 LSM10Q969L4 123 aaKnown RBP18.63■□□□□ 0.57
SHMT1-201ENST00000316694 CHD3Q12873 2000 aaKnown RBP18.63■□□□□ 0.57
SHMT1-201ENST00000316694 IGHV3-64DA0A0J9YX35 117 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 HIST1H2BKO60814 126 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 HIST1H2BJP06899 126 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 HIST1H2BOP23527 126 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 HIST1H2BBP33778 126 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 HIST1H2BDP58876 126 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 HIST1H2BCP62807 126 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 HIST2H2BEQ16778 126 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 HIST2H2BFQ5QNW6 126 aaPredicted RBP18.63■□□□□ 0.57
SHMT1-201ENST00000316694 TMEM251Q8N6I4 163 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 HIST1H2BHQ93079 126 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 HIST1H2BNQ99877 126 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 HIST1H2BMQ99879 126 aa18.63■□□□□ 0.57
SHMT1-201ENST00000316694 A0A1W2PR80 420 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms