RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 TAS2R4Q9NYW5 299 aa13.99□□□□□ -0.17
SHKBP1-227ENST00000602011 LSM4Q9Y4Z0 139 aaKnown RBP13.99□□□□□ -0.17
SHKBP1-227ENST00000602011 U3KQK5 164 aa13.99□□□□□ -0.17
SHKBP1-227ENST00000602011 GEMIN2O14893 280 aaKnown RBP13.98□□□□□ -0.17
SHKBP1-227ENST00000602011 GPX5O75715 221 aa13.98□□□□□ -0.17
SHKBP1-227ENST00000602011 CDRT1O95170 752 aa13.98□□□□□ -0.17
SHKBP1-227ENST00000602011 RPLP1P05386 114 aaKnown RBP13.98□□□□□ -0.17
SHKBP1-227ENST00000602011 GLAP06280 429 aa13.98□□□□□ -0.17
SHKBP1-227ENST00000602011 DCKP27707 260 aa13.98□□□□□ -0.17
SHKBP1-227ENST00000602011 SOX2P48431 317 aa13.98□□□□□ -0.17
SHKBP1-227ENST00000602011 RAB25P57735 213 aa13.98□□□□□ -0.17
SHKBP1-227ENST00000602011 C6orf183Q5T699 404 aa13.98□□□□□ -0.17
SHKBP1-227ENST00000602011 ZNF497Q6ZNH5 498 aa13.98□□□□□ -0.17
SHKBP1-227ENST00000602011 C18orf65Q6ZTR6 163 aa13.98□□□□□ -0.17
SHKBP1-227ENST00000602011 FGF20Q9NP95 211 aaPredicted RBP13.98□□□□□ -0.17
SHKBP1-227ENST00000602011 CKLFQ9UBR5 152 aa13.98□□□□□ -0.17
SHKBP1-227ENST00000602011 LOC100130705A0A1B0GUX0 176 aa13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 A0A1W2PPE3 182 aa13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 LINC01548A6NM66 108 aa13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 MCRIP1C9JLW8 97 aa13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 REG1BP48304 166 aa13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 ATAD3CQ5T2N8 411 aa13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 DDI2Q5TDH0 399 aa13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 SLC25A48Q6ZT89 311 aaKnown RBP13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 ZNF554Q86TJ5 538 aa13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 CDH26Q8IXH8 852 aa13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 NEK7Q8TDX7 302 aa13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 C4orf3Q8WVX3 66 aa13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 AMBNQ9NP70 447 aa13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 BABAM2Q9NXR7 383 aa13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 DYNC2H1Q8NCM8 4307 aaKnown RBP13.97□□□□□ -0.17
SHKBP1-227ENST00000602011 IGHV3-72A0A0B4J1Y9 119 aa13.96□□□□□ -0.17
SHKBP1-227ENST00000602011 C3orf84H3BNL1 204 aa13.96□□□□□ -0.17
SHKBP1-227ENST00000602011 AIPO00170 330 aa13.96□□□□□ -0.17
SHKBP1-227ENST00000602011 LIMS3P0CW19 117 aa13.96□□□□□ -0.17
SHKBP1-227ENST00000602011 LIMS4P0CW20 117 aa13.96□□□□□ -0.17
SHKBP1-227ENST00000602011 MED21Q13503 144 aa13.96□□□□□ -0.17
SHKBP1-227ENST00000602011 RIPK1Q13546 671 aa13.96□□□□□ -0.17
SHKBP1-227ENST00000602011 FAM71E2Q8N5Q1 922 aa13.96□□□□□ -0.17
SHKBP1-227ENST00000602011 GNG12Q9UBI6 72 aa13.96□□□□□ -0.17
SHKBP1-227ENST00000602011 TRAPPC2LQ9UL33 140 aa13.96□□□□□ -0.17
SHKBP1-227ENST00000602011 TRAV39A0A0B4J263 110 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 FAM90A10PA6NDY2 464 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 FAM90A7PA6NKC0 464 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 FAM90A23PA8MXZ1 464 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 SEC14L6B5MCN3 397 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 OGG1O15527 345 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 LANCL1O43813 399 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 SERPINA2P20848 420 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 PSMB8P28062 276 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 GTF2A1P52655 376 aaPredicted RBP13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 CFHR3Q02985 330 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 GAPTQ8N292 157 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 RGP1Q92546 391 aaPredicted RBP13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 SMIM19Q96E16 107 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 UBE2E2Q96LR5 201 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 RCC2Q9P258 522 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 AASSQ9UDR5 926 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 LRRC42Q9Y546 428 aa13.95□□□□□ -0.18
SHKBP1-227ENST00000602011 H3BNX3 289 aa13.94□□□□□ -0.18
SHKBP1-227ENST00000602011 OR8U8P0C7N1 319 aa13.94□□□□□ -0.18
SHKBP1-227ENST00000602011 CHATP28329 748 aa13.94□□□□□ -0.18
SHKBP1-227ENST00000602011 RUNX1Q01196 453 aa13.94□□□□□ -0.18
SHKBP1-227ENST00000602011 FHL3Q13643 280 aa13.94□□□□□ -0.18
SHKBP1-227ENST00000602011 SLC22A6Q4U2R8 563 aa13.94□□□□□ -0.18
SHKBP1-227ENST00000602011 SYT6Q5T7P8 510 aaPredicted RBP13.94□□□□□ -0.18
SHKBP1-227ENST00000602011 TMEM65Q6PI78 240 aa13.94□□□□□ -0.18
SHKBP1-227ENST00000602011 CCDC107Q8WV48 283 aa13.94□□□□□ -0.18
SHKBP1-227ENST00000602011 RDH12Q96NR8 316 aa13.94□□□□□ -0.18
SHKBP1-227ENST00000602011 DUX3Q96PT4 197 aa13.94□□□□□ -0.18
SHKBP1-227ENST00000602011 SCOCQ9UIL1 159 aa13.94□□□□□ -0.18
SHKBP1-227ENST00000602011 ERGIC3Q9Y282 383 aa13.94□□□□□ -0.18
SHKBP1-227ENST00000602011 IGFBP3P17936 291 aaPredicted RBP13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 MYL12AP19105 171 aa13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 VHLP40337 213 aa13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 ECI1P42126 302 aa13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 YIF1BQ5BJH7 314 aa13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 CT45A1Q5HYN5 189 aa13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 LY6G6FQ5SQ64 297 aa13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 ZNF439Q8NDP4 499 aa13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 CT45A3Q8NHU0 189 aa13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 MYOZ3Q8TDC0 251 aa13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 KCTD7Q96MP8 289 aa13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 ZNF184Q99676 751 aaPredicted RBP13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 ETAA1Q9NY74 926 aa13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 KCNIP1Q9NZI2 227 aa13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 ZNF107Q9UII5 783 aaPredicted RBP13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 VSIG4Q9Y279 399 aa13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 ZNF256Q9Y2P7 627 aaPredicted RBP13.93□□□□□ -0.18
SHKBP1-227ENST00000602011 C12orf77C9JDV5 145 aa13.92□□□□□ -0.18
SHKBP1-227ENST00000602011 LUMP51884 338 aaPredicted RBP13.92□□□□□ -0.18
SHKBP1-227ENST00000602011 Q499Y3 187 aa13.92□□□□□ -0.18
SHKBP1-227ENST00000602011 ZNF429Q86V71 674 aa13.92□□□□□ -0.18
SHKBP1-227ENST00000602011 ZNF555Q8NEP9 628 aa13.92□□□□□ -0.18
SHKBP1-227ENST00000602011 OR11H1Q8NG94 326 aa13.92□□□□□ -0.18
SHKBP1-227ENST00000602011 THRSPQ92748 146 aa13.92□□□□□ -0.18
SHKBP1-227ENST00000602011 GHSRQ92847 366 aa13.92□□□□□ -0.18
SHKBP1-227ENST00000602011 EXOSC1Q9Y3B2 195 aaKnown RBP13.92□□□□□ -0.18
SHKBP1-227ENST00000602011 RYR2Q92736 4967 aa13.91□□□□□ -0.18
SHKBP1-227ENST00000602011 IGHV3-43A0A0B4J1X8 118 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 219.9 ms