RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 IGKV1D-12P01611 117 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 IGHV4-34P06331 123 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 PATE4P0C8F1 98 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 GABRG2P18507 467 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 HIST1H3AP68431 136 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 OR5I1Q13606 314 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 PRSS8Q16651 343 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 SSX7Q7RTT5 188 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 MYPOPQ86VE0 399 aaPredicted RBP11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 MAML2Q8IZL2 1156 aaPredicted RBP11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 OR1K1Q8NGR3 316 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 IL1F10Q8WWZ1 152 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 SIGLEC12Q96PQ1 595 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 RAB40CQ96S21 281 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 MTIF3Q9H2K0 278 aaKnown RBP11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 PARLQ9H300 379 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 SEMA5BQ9P283 1151 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 PAM16Q9Y3D7 125 aa11.05□□□□□ -0.64
SFSWAP-209ENST00000540469 A0A1B0GX78 115 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 EPOPA6NHQ4 379 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 B4E171 279 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 M0QZK8 103 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 GGCTO75223 188 aaKnown RBP11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 HOXA6P31267 233 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 TSPAN7P41732 249 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 COTL1Q14019 142 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 ENDOGQ14249 297 aaKnown RBP11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 ZNF726P1Q15940 193 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 TMEM211Q6ICI0 200 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 C10orf35Q96D05 121 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 C11orf1Q9H5F2 150 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 CACNG5Q9UF02 275 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 PTRH2Q9Y3E5 179 aaKnown RBP11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 IGKV1D-13A0A0B4J2D9 117 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 IGKV1-13P0DP09 117 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 C1orf194Q5T5A4 169 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 ZNF774Q6NX45 483 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 POC1BQ8TC44 478 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 ZNF385AQ96PM9 386 aaKnown RBP11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 POLR3KQ9Y2Y1 108 aaPredicted RBP11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 THADAQ6YHU6 1953 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 PCDH15Q96QU1 1955 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 A0A1B0GUS0 222 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 HPRT1P00492 218 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 GYPAP02724 150 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 FASLGP48023 281 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 OR1D5P58170 312 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 PMP22Q01453 160 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 KCNMB1Q16558 191 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 RNF151Q2KHN1 245 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 NMSQ5H8A3 153 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 RAET1LQ5VY80 246 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 KIAA0895LQ68EN5 471 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 ODF3L1Q8IXM7 274 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 DIRC2Q96SL1 478 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 PPIAL4AQ9Y536 164 aa11.04□□□□□ -0.64
SFSWAP-209ENST00000540469 ZNF407Q9C0G0 2248 aa11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 BMP5P22003 454 aa11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 MSX1P28360 303 aa11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 RBM11P57052 281 aaKnown RBP11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 ARSJQ5FYB0 599 aaPredicted RBP11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 PHYHD1Q5SRE7 291 aa11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 ZNF611Q8N823 705 aa11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 PINX1Q96BK5 328 aaKnown RBP11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 GPR146Q96CH1 333 aa11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 VPS13AQ96RL7 3174 aa11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 SYNGR2O43760 224 aa11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 PAX9P55771 341 aa11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 OR8B8Q15620 311 aa11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 COA6Q5JTJ3 125 aaKnown RBP11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 OR6C3Q9NZP0 311 aa11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 COL4A2P08572 1712 aa11.03□□□□□ -0.64
SFSWAP-209ENST00000540469 LILRA5A6NI73 299 aa11.02□□□□□ -0.64
SFSWAP-209ENST00000540469 SLC22A20A6NK97 555 aa11.02□□□□□ -0.64
SFSWAP-209ENST00000540469 AQP7P3A6NL99 342 aa11.02□□□□□ -0.64
SFSWAP-209ENST00000540469 CTSSP25774 331 aa11.02□□□□□ -0.64
SFSWAP-209ENST00000540469 UCP1P25874 307 aa11.02□□□□□ -0.64
SFSWAP-209ENST00000540469 BPIFB3P59826 476 aa11.02□□□□□ -0.64
SFSWAP-209ENST00000540469 DCAF10Q5QP82 559 aa11.02□□□□□ -0.64
SFSWAP-209ENST00000540469 GBGT1Q8N5D6 347 aa11.02□□□□□ -0.64
SFSWAP-209ENST00000540469 MBD3L1Q8WWY6 194 aa11.02□□□□□ -0.64
SFSWAP-209ENST00000540469 SGCZQ96LD1 299 aa11.02□□□□□ -0.64
SFSWAP-209ENST00000540469 TAAR3PQ9P1P4 343 aa11.02□□□□□ -0.64
SFSWAP-209ENST00000540469 KCNS2Q9ULS6 477 aa11.02□□□□□ -0.64
SFSWAP-209ENST00000540469 ESPL1Q14674 2120 aa11.02□□□□□ -0.64
SFSWAP-209ENST00000540469 C2orf16Q68DN1 1984 aa11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 CCNOP22674 350 aa11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 NPBWR2P48146 333 aa11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 PPP1CBP62140 327 aa11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 CALHM1Q8IU99 346 aa11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 TMEM256Q8N2U0 113 aa11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 CISD2Q8N5K1 135 aaKnown RBP11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 FGF21Q9NSA1 209 aa11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 A0A0G2JRQ6 117 aa11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 DUXBA0A1W2PPF3 345 aa11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 CLDN1O95832 211 aa11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 PSG2P11465 335 aa11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 IRF2P14316 349 aa11.02□□□□□ -0.65
SFSWAP-209ENST00000540469 SERF2P84101 59 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms