RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 RPLP1P05386 114 aaKnown RBP5.6□□□□□ -1.51
VPS41-208ENST00000448833 SERPINA2P20848 420 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 MAPK3P27361 379 aaPredicted RBP5.6□□□□□ -1.51
VPS41-208ENST00000448833 CALRP27797 417 aaKnown RBP5.6□□□□□ -1.51
VPS41-208ENST00000448833 SSTR5P35346 364 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 RANBP1P43487 201 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 CDX1P47902 265 aaPredicted RBP5.6□□□□□ -1.51
VPS41-208ENST00000448833 THBS3P49746 956 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 GNG10P50151 68 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 ETV1P50549 477 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 GTF2A1P52655 376 aaPredicted RBP5.6□□□□□ -1.51
VPS41-208ENST00000448833 DOC2BQ14184 412 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 HNF4GQ14541 408 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 LTC4SQ16873 150 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 SLC22A6Q4U2R8 563 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 CXorf66Q5JRM2 361 aaPredicted RBP5.6□□□□□ -1.51
VPS41-208ENST00000448833 VAX1Q5SQQ9 334 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 HIST2H2BDQ6DRA6 164 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 ZNF497Q6ZNH5 498 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 OR2W3Q7Z3T1 314 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 RNF144BQ7Z419 303 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 ZNF329Q86UD4 541 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 ZNF695Q8IW36 515 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 MRPL41Q8IXM3 137 aaKnown RBP5.6□□□□□ -1.51
VPS41-208ENST00000448833 STPG2Q8N412 459 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 PACRGLQ8N7B6 248 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 LINC00482Q8N8I6 264 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 OR8U1Q8NH10 309 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 RTN4IP1Q8WWV3 396 aaPredicted RBP5.6□□□□□ -1.51
VPS41-208ENST00000448833 GHSRQ92847 366 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 LEAP2Q969E1 77 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 EAF1Q96JC9 268 aaPredicted RBP5.6□□□□□ -1.51
VPS41-208ENST00000448833 ZNF184Q99676 751 aaPredicted RBP5.6□□□□□ -1.51
VPS41-208ENST00000448833 SLC29A1Q99808 456 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 ABCG5Q9H222 651 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 GHITMQ9H3K2 345 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 GFOD1Q9NXC2 390 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 AASSQ9UDR5 926 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 ERGIC3Q9Y282 383 aa5.6□□□□□ -1.51
VPS41-208ENST00000448833 EFCAB10A6NFE3 127 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 C15orf65H3BRN8 121 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 WBP4O75554 376 aaKnown RBP5.59□□□□□ -1.51
VPS41-208ENST00000448833 RGS11O94810 467 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 CD1AP06126 327 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 ELANEP08246 267 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 NHLRC4P0CG21 123 aaPredicted RBP5.59□□□□□ -1.51
VPS41-208ENST00000448833 UBBP0CG47 229 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 IGFBP3P17936 291 aaPredicted RBP5.59□□□□□ -1.51
VPS41-208ENST00000448833 FSTP19883 344 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 FUT3P21217 361 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 VDAC1P21796 283 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 SOX6P35712 828 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 CAPGP40121 348 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 ZNF137PP52743 207 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 DGCR2P98153 550 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 CD69Q07108 199 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 FOXE3Q13461 319 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 GPR50Q13585 617 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 KIR2DS1Q14954 304 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 OR2G6Q5TZ20 316 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 DMKNQ6E0U4 476 aaPredicted RBP5.59□□□□□ -1.51
VPS41-208ENST00000448833 RAB12Q6IQ22 244 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 SLC25A48Q6ZT89 311 aaKnown RBP5.59□□□□□ -1.51
VPS41-208ENST00000448833 DHRSXQ8N5I4 330 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 JAGN1Q8N5M9 183 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 NKAIN3Q8N8D7 197 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 KLHL30-AS1Q8NEE0 82 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 OR5M8Q8NGP6 311 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 OR10K1Q8NGX5 313 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 PLPPR1Q8TBJ4 325 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 ST6GALNAC6Q969X2 333 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 UQCC2Q9BRT2 126 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 CST11Q9H112 138 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 ETAA1Q9NY74 926 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 CNOT2Q9NZN8 540 aaKnown RBP5.59□□□□□ -1.51
VPS41-208ENST00000448833 GNG12Q9UBI6 72 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 ZNF580Q9UK33 172 aa5.59□□□□□ -1.51
VPS41-208ENST00000448833 MRPS28Q9Y2Q9 187 aaKnown RBP5.59□□□□□ -1.51
VPS41-208ENST00000448833 TRBV5-5A0A0J9YX44 114 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 SH2D7A6NKC9 451 aaPredicted RBP5.58□□□□□ -1.52
VPS41-208ENST00000448833 H0YHG0 523 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 CCL24O00175 119 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 LANCL1O43813 399 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 SC5DO75845 299 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 IGHV3-7P01780 117 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 IGF1P05019 195 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 GPR12P47775 334 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 INSL3P51460 131 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 HTD2P86397 168 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 ST3GAL4Q11206 333 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 SMN1Q16637 294 aaKnown RBP5.58□□□□□ -1.52
VPS41-208ENST00000448833 LY6G6FQ5SQ64 297 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 SYT6Q5T7P8 510 aaPredicted RBP5.58□□□□□ -1.52
VPS41-208ENST00000448833 C9orf66Q5T8R8 295 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 AWAT2Q6E213 333 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 TMEM65Q6PI78 240 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 GLIPR1L1Q6UWM5 242 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 GAPTQ8N292 157 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 MS4A15Q8N5U1 240 aa5.58□□□□□ -1.52
VPS41-208ENST00000448833 Q8N6K4 173 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms