RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 CDK5RAP2Q96SN8 1893 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 A0A1B0GU03 582 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 BGLAPP02818 100 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 PGA4P0DJD7 388 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 PGA5P0DJD9 388 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 TNFAIP6P98066 277 aaPredicted RBP9□□□□□ -0.97
LIMCH1-203ENST00000396595 HYAL1Q12794 435 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 GGTLC2Q14390 218 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 ZNF880Q6PDB4 577 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 OR1N2Q8NGR9 330 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 OR13C6PQ8NH95 151 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 HSD17B10Q99714 261 aaKnown RBP9□□□□□ -0.97
LIMCH1-203ENST00000396595 PLA2G2FQ9BZM2 168 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 GHITMQ9H3K2 345 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 TMEM140Q9NV12 185 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 AMMECR1Q9Y4X0 333 aaPredicted RBP9□□□□□ -0.97
LIMCH1-203ENST00000396595 SNURFLB1AK76 121 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 CA1P00915 261 aaPredicted RBP9□□□□□ -0.97
LIMCH1-203ENST00000396595 COL9A1P20849 921 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 SPNS3Q6ZMD2 512 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 HOGA1Q86XE5 327 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 ZBTB34Q8NCN2 500 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 CCL28Q9NRJ3 127 aa9□□□□□ -0.97
LIMCH1-203ENST00000396595 NHSQ6T4R5 1651 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 SLC25A17O43808 307 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 IER3P46695 156 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 KHDC3LQ587J8 217 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 GFRALQ6UXV0 394 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 ZAR1Q86SH2 424 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 ADAD2Q8NCV1 583 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 RASL10BQ96S79 203 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 TIMP4Q99727 224 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 PTPRZ1P23471 2315 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 CTXND1A0A1B0GTU2 59 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 A0A1W2PR80 420 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 SMIM13P0DJ93 91 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 CD40P25942 277 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 ZNF260Q3ZCT1 412 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 CHST5Q9GZS9 411 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 CA10Q9NS85 328 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 A0A1W2PPV9 198 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 NKX2-6A6NCS4 301 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 J3QT63 122 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 JOSD1Q15040 202 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 LYZL2Q7Z4W2 148 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 TREM2Q9NZC2 230 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 CCL2P13500 99 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 CDX1P47902 265 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 TCL1AP56279 114 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 LSM11P83369 360 aaKnown RBP eCLIP8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 LYPD8Q6UX82 237 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 HIST1H4GQ99525 98 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 CLEC1BQ9P126 229 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 TINAGQ9UJW2 476 aa8.99□□□□□ -0.97
LIMCH1-203ENST00000396595 IGHV1OR15-9A0A0B4J2B8 117 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 CKS1BP61024 79 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 C9orf50Q5SZB4 431 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 RIPPLY2Q5TAB7 128 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 TMEM108Q6UXF1 575 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 TMEM92Q6UXU6 159 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 GLRX2Q9NS18 164 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 ONECUT1Q9UBC0 465 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 VSIG4Q9Y279 399 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 OR2W1Q9Y3N9 320 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 DNAJC13O75165 2243 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 PRF1P14222 555 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 ORM2P19652 201 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 GZMHP20718 246 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 CEACAM3P40198 252 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 PMELP40967 661 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 EFNB2P52799 333 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 PSG5Q15238 335 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 GRAMD2BQ96HH9 432 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 NRIP2Q9BQI9 281 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 RPP25Q9BUL9 199 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 F5H697 171 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 CELA2BP08218 269 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 ATP6V0CP27449 155 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 CTAG1AP78358 180 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 OR10S1Q8NGN2 331 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 RP1P56715 2156 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 A0A1B0GWB2 263 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 MEX3AA1L020 520 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 PAGE4O60829 102 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 LYZL6O75951 148 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 GOSR1O95249 250 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 GAPDHP04406 335 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 NMBP08949 121 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 RIGQ13278 110 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 HFEQ30201 348 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 OR4P4Q8NGL7 312 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 IGSF23A1L1A6 192 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 SH2D7A6NKC9 451 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 MRPL54Q6P161 138 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 FAM219AQ8IW50 185 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 WDFY1Q8IWB7 410 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 MRPL30Q8TCC3 161 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 SLC26A1Q9H2B4 701 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 CDC42EP3Q9UKI2 254 aa8.98□□□□□ -0.97
LIMCH1-203ENST00000396595 FZR1Q9UM11 496 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms