RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 CXorf58Q96LI9 332 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 AQP10Q96PS8 301 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 RNF126Q9BV68 326 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 SUCNR1Q9BXA5 334 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 SHARPINQ9H0F6 387 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 Q9N2K0 584 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 ZFP57Q9NU63 452 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 IGKV1D-8A0A087WSZ0 117 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 B8ZZF3 427 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 E7EQL1 145 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 HSPB6O14558 160 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 TAAR5O14804 337 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 ZNF728P0DKX0 622 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 SNTB1Q13884 538 aaKnown RBP15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 DMRTC2Q8IXT2 367 aaPredicted RBP15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 BVESQ8NE79 360 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 DYRK2Q92630 601 aa15.32■□□□□ 0.04
CCDC88C-203ENST00000389856 FAM221AA4D161 298 aa15.31■□□□□ 0.04
CCDC88C-203ENST00000389856 NUDT19A8MXV4 375 aa15.31■□□□□ 0.04
CCDC88C-203ENST00000389856 TRDCB7Z8K6 153 aa15.31■□□□□ 0.04
CCDC88C-203ENST00000389856 PI3P19957 117 aa15.31■□□□□ 0.04
CCDC88C-203ENST00000389856 GRNP28799 593 aaKnown RBP15.31■□□□□ 0.04
CCDC88C-203ENST00000389856 UQCRFS1P47985 274 aa15.31■□□□□ 0.04
CCDC88C-203ENST00000389856 ATXN7L3Q14CW9 347 aaPredicted RBP15.31■□□□□ 0.04
CCDC88C-203ENST00000389856 SLC38A6Q8IZM9 456 aa15.31■□□□□ 0.04
CCDC88C-203ENST00000389856 LRTM2Q8N967 370 aa15.31■□□□□ 0.04
CCDC88C-203ENST00000389856 ITLN2Q8WWU7 325 aaPredicted RBP15.31■□□□□ 0.04
CCDC88C-203ENST00000389856 WDR13Q9H1Z4 485 aa15.31■□□□□ 0.04
CCDC88C-203ENST00000389856 CISD1Q9NZ45 108 aaKnown RBP15.31■□□□□ 0.04
CCDC88C-203ENST00000389856 PPP1R3CQ9UQK1 317 aa15.31■□□□□ 0.04
CCDC88C-203ENST00000389856 WIPI2Q9Y4P8 454 aa15.31■□□□□ 0.04
CCDC88C-203ENST00000389856 ABCA11PQ4W5N1 156 aa15.3■□□□□ 0.04
CCDC88C-203ENST00000389856 FAM185AQ8N0U4 392 aa15.3■□□□□ 0.04
CCDC88C-203ENST00000389856 C1orf87Q8N0U7 546 aa15.3■□□□□ 0.04
CCDC88C-203ENST00000389856 CCDC71LQ8N9Z2 235 aa15.3■□□□□ 0.04
CCDC88C-203ENST00000389856 GCM1Q9NP62 436 aa15.3■□□□□ 0.04
CCDC88C-203ENST00000389856 PLCE1Q9P212 2302 aa15.3■□□□□ 0.04
CCDC88C-203ENST00000389856 TMEM30CPA0ZSE6 113 aa15.29■□□□□ 0.04
CCDC88C-203ENST00000389856 WNT9BO14905 357 aa15.29■□□□□ 0.04
CCDC88C-203ENST00000389856 ZG16O60844 167 aa15.29■□□□□ 0.04
CCDC88C-203ENST00000389856 ADAP1O75689 374 aa15.29■□□□□ 0.04
CCDC88C-203ENST00000389856 TK1P04183 234 aa15.29■□□□□ 0.04
CCDC88C-203ENST00000389856 ZNF672Q499Z4 452 aaPredicted RBP15.29■□□□□ 0.04
CCDC88C-203ENST00000389856 ZNF497Q6ZNH5 498 aa15.29■□□□□ 0.04
CCDC88C-203ENST00000389856 OR4A4PQ8NGN8 299 aa15.29■□□□□ 0.04
CCDC88C-203ENST00000389856 MRPL30Q8TCC3 161 aaKnown RBP15.29■□□□□ 0.04
CCDC88C-203ENST00000389856 MOB3AQ96BX8 217 aa15.29■□□□□ 0.04
CCDC88C-203ENST00000389856 NAA60Q9H7X0 242 aa15.29■□□□□ 0.04
CCDC88C-203ENST00000389856 SAP30LQ9HAJ7 183 aa15.29■□□□□ 0.04
CCDC88C-203ENST00000389856 HCFC1P51610 2035 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 DIRAS3O95661 229 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 LHBP01229 141 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 SRPXP78539 464 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 SMCO1Q147U7 214 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 CDSNQ15517 529 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 EIF5AL1Q6IS14 154 aaKnown RBP15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 ZNF880Q6PDB4 577 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 UQCC3Q6UW78 93 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 BAP18Q8IXM2 172 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 GAPTQ8N292 157 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 STPG2Q8N412 459 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 GCSAMQ8N6F7 178 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 FAM222BQ8WU58 562 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 C17orf50Q8WW18 174 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 TMEM204Q9BSN7 226 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 KCNIP1Q9NZI2 227 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 TRAPPC2LQ9UL33 140 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 DIDO1Q9BTC0 2240 aaKnown RBP15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 H0YIZ8 118 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 PRDX2P32119 198 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 HERV-K104P61576 105 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 SLC35E4Q6ICL7 350 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 TRAT1Q6PIZ9 186 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 BOLLQ8N9W6 283 aaKnown RBP15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 LILRB1Q8NHL6 650 aaPredicted RBP15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 OR10C1Q96KK4 312 aa15.28■□□□□ 0.04
CCDC88C-203ENST00000389856 CHD3Q12873 2000 aaKnown RBP15.27■□□□□ 0.04
CCDC88C-203ENST00000389856 DEFB108AA8MXU0 73 aa15.27■□□□□ 0.03
CCDC88C-203ENST00000389856 FGF16O43320 207 aa15.27■□□□□ 0.03
CCDC88C-203ENST00000389856 MUC1P15941 1255 aaPredicted RBP15.27■□□□□ 0.03
CCDC88C-203ENST00000389856 PIGPP57054 158 aa15.27■□□□□ 0.03
CCDC88C-203ENST00000389856 HLA-DRB3P79483 266 aa15.27■□□□□ 0.03
CCDC88C-203ENST00000389856 IAH1Q2TAA2 248 aaPredicted RBP15.27■□□□□ 0.03
CCDC88C-203ENST00000389856 MUC15Q8N387 334 aa15.27■□□□□ 0.03
CCDC88C-203ENST00000389856 RSRP1Q9BUV0 290 aa15.27■□□□□ 0.03
CCDC88C-203ENST00000389856 NARFLQ9H6Q4 476 aa15.27■□□□□ 0.03
CCDC88C-203ENST00000389856 BARX1Q9HBU1 254 aaPredicted RBP15.27■□□□□ 0.03
CCDC88C-203ENST00000389856 PCDHB10Q9UN67 800 aa15.27■□□□□ 0.03
CCDC88C-203ENST00000389856 ANKHD1Q8IWZ3 2542 aaKnown RBP15.27■□□□□ 0.03
CCDC88C-203ENST00000389856 PIGBOS1A0A0B4J2F0 54 aa15.26■□□□□ 0.03
CCDC88C-203ENST00000389856 RAB19A4D1S5 217 aa15.26■□□□□ 0.03
CCDC88C-203ENST00000389856 TEX46H3BTG2 121 aa15.26■□□□□ 0.03
CCDC88C-203ENST00000389856 HOXB5P09067 269 aa15.26■□□□□ 0.03
CCDC88C-203ENST00000389856 PSG2P11465 335 aa15.26■□□□□ 0.03
CCDC88C-203ENST00000389856 FCGR2CP31995 323 aa15.26■□□□□ 0.03
CCDC88C-203ENST00000389856 PAX5Q02548 391 aa15.26■□□□□ 0.03
CCDC88C-203ENST00000389856 COL10A1Q03692 680 aa15.26■□□□□ 0.03
CCDC88C-203ENST00000389856 RAB32Q13637 225 aa15.26■□□□□ 0.03
CCDC88C-203ENST00000389856 TMEM187Q14656 261 aa15.26■□□□□ 0.03
CCDC88C-203ENST00000389856 RTN4IP1Q8WWV3 396 aaPredicted RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms