RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CCL19Q99731 98 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 ALX4Q9H161 411 aaPredicted RBP15.43■□□□□ 0.06
CLN3-206ENST00000360019 SLC23A1Q9UHI7 598 aa15.43■□□□□ 0.06
CLN3-206ENST00000360019 DOPEY2Q9Y3R5 2298 aa15.42■□□□□ 0.06
CLN3-206ENST00000360019 DVL1O14640 695 aa15.42■□□□□ 0.06
CLN3-206ENST00000360019 PPIHO43447 177 aaKnown RBP15.42■□□□□ 0.06
CLN3-206ENST00000360019 IL5P05113 134 aa15.42■□□□□ 0.06
CLN3-206ENST00000360019 NDUFB7P17568 137 aa15.42■□□□□ 0.06
CLN3-206ENST00000360019 SLC25A42Q86VD7 318 aa15.42■□□□□ 0.06
CLN3-206ENST00000360019 RTBDNQ9BSG5 229 aaPredicted RBP15.42■□□□□ 0.06
CLN3-206ENST00000360019 OR6C3Q9NZP0 311 aa15.42■□□□□ 0.06
CLN3-206ENST00000360019 NDUFB3O43676 98 aa15.41■□□□□ 0.06
CLN3-206ENST00000360019 OR4E1P0C645 316 aa15.41■□□□□ 0.06
CLN3-206ENST00000360019 CBX3Q13185 183 aa15.41■□□□□ 0.06
CLN3-206ENST00000360019 METTL11BQ5VVY1 283 aa15.41■□□□□ 0.06
CLN3-206ENST00000360019 TRAT1Q6PIZ9 186 aa15.41■□□□□ 0.06
CLN3-206ENST00000360019 H1FOOQ8IZA3 346 aaPredicted RBP15.41■□□□□ 0.06
CLN3-206ENST00000360019 MUC20Q8N307 709 aaPredicted RBP15.41■□□□□ 0.06
CLN3-206ENST00000360019 ZNF565Q8N9K5 539 aa15.41■□□□□ 0.06
CLN3-206ENST00000360019 OR52B4Q8NGK2 314 aa15.41■□□□□ 0.06
CLN3-206ENST00000360019 RFESDQ8TAC1 157 aa15.41■□□□□ 0.06
CLN3-206ENST00000360019 TOMM40LQ969M1 308 aa15.41■□□□□ 0.06
CLN3-206ENST00000360019 ARL11Q969Q4 196 aa15.41■□□□□ 0.06
CLN3-206ENST00000360019 GALMQ96C23 342 aa15.41■□□□□ 0.06
CLN3-206ENST00000360019 TIMD4Q96H15 378 aa15.41■□□□□ 0.06
CLN3-206ENST00000360019 PTPN13Q12923 2485 aa15.41■□□□□ 0.06
CLN3-206ENST00000360019 DIRAS3O95661 229 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 HEXAP06865 529 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 CGB3P0DN86 165 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 CGB7P0DN87 165 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 PGAM2P15259 253 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 GZMHP20718 246 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 ECI1P42126 302 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 TMEM33P57088 247 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 LRRC10Q5BKY1 277 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 LDLRAD3Q86YD5 345 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 CHAC2Q8WUX2 184 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 RAB1CQ92928 201 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 TMEM230Q96A57 120 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 DACT3Q96B18 629 aaPredicted RBP15.4■□□□□ 0.06
CLN3-206ENST00000360019 SCGB3A2Q96PL1 93 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 OR51J1Q9H342 316 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 OPN4Q9UHM6 478 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 IGKV1D-13A0A0B4J2D9 117 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 PFDN1O60925 122 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 IGHV4-39P01824 125 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 ZNF728P0DKX0 622 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 IGKV1-13P0DP09 117 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 IL2RGP31785 369 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 HERV-K104P61576 105 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 C4orf46Q504U0 113 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 FAM53AQ6NSI3 398 aaPredicted RBP15.4■□□□□ 0.06
CLN3-206ENST00000360019 NEURL2Q9BR09 285 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 PARP12Q9H0J9 701 aaKnown RBP15.4■□□□□ 0.06
CLN3-206ENST00000360019 C19orf12Q9NSK7 152 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 ZNF69Q9UC07 566 aa15.4■□□□□ 0.06
CLN3-206ENST00000360019 FAM172BPA6NC97 362 aa15.39■□□□□ 0.05
CLN3-206ENST00000360019 HSPA12AO43301 675 aa15.39■□□□□ 0.05
CLN3-206ENST00000360019 AKR1C4P17516 323 aa15.39■□□□□ 0.05
CLN3-206ENST00000360019 ZBTB25P24278 435 aa15.39■□□□□ 0.05
CLN3-206ENST00000360019 UCP3P55916 312 aa15.39■□□□□ 0.05
CLN3-206ENST00000360019 GNMTQ14749 295 aa15.39■□□□□ 0.05
CLN3-206ENST00000360019 C17orf58Q2M2W7 97 aa15.39■□□□□ 0.05
CLN3-206ENST00000360019 TMEM155Q4W5P6 130 aa15.39■□□□□ 0.05
CLN3-206ENST00000360019 ZNF626Q68DY1 528 aa15.39■□□□□ 0.05
CLN3-206ENST00000360019 ZNF841Q6ZN19 808 aa15.39■□□□□ 0.05
CLN3-206ENST00000360019 OR52L2PQ8NGH6 319 aa15.39■□□□□ 0.05
CLN3-206ENST00000360019 NRGNQ92686 78 aa15.39■□□□□ 0.05
CLN3-206ENST00000360019 CALYQ9NYX4 217 aa15.39■□□□□ 0.05
CLN3-206ENST00000360019 GCN1Q92616 2671 aaKnown RBP15.39■□□□□ 0.05
CLN3-206ENST00000360019 TRGV10A0A0A0MS01 117 aa15.38■□□□□ 0.05
CLN3-206ENST00000360019 SPINT2O43291 252 aa15.38■□□□□ 0.05
CLN3-206ENST00000360019 CTSDP07339 412 aaPredicted RBP15.38■□□□□ 0.05
CLN3-206ENST00000360019 RPS2P15880 293 aaKnown RBP15.38■□□□□ 0.05
CLN3-206ENST00000360019 CEACAM6P40199 344 aa15.38■□□□□ 0.05
CLN3-206ENST00000360019 RRAS2P62070 204 aaPredicted RBP15.38■□□□□ 0.05
CLN3-206ENST00000360019 PPP1R1AQ13522 171 aa15.38■□□□□ 0.05
CLN3-206ENST00000360019 ZNF525Q8N782 197 aa15.38■□□□□ 0.05
CLN3-206ENST00000360019 RDH8Q9NYR8 311 aa15.38■□□□□ 0.05
CLN3-206ENST00000360019 OR2W1Q9Y3N9 320 aa15.38■□□□□ 0.05
CLN3-206ENST00000360019 HMX3A6NHT5 357 aa15.38■□□□□ 0.05
CLN3-206ENST00000360019 SNRPGP15A8MWD9 76 aa15.38■□□□□ 0.05
CLN3-206ENST00000360019 RPL31P62899 125 aaKnown RBP15.38■□□□□ 0.05
CLN3-206ENST00000360019 DHRS2Q13268 280 aa15.38■□□□□ 0.05
CLN3-206ENST00000360019 ZNF273Q14593 569 aa15.38■□□□□ 0.05
CLN3-206ENST00000360019 FAHD2BQ6P2I3 314 aaPredicted RBP15.38■□□□□ 0.05
CLN3-206ENST00000360019 H1FXQ92522 213 aaKnown RBP15.38■□□□□ 0.05
CLN3-206ENST00000360019 CORO2AQ92828 525 aa15.38■□□□□ 0.05
CLN3-206ENST00000360019 FAHD2AQ96GK7 314 aa15.38■□□□□ 0.05
CLN3-206ENST00000360019 GPN1Q9HCN4 374 aaPredicted RBP15.38■□□□□ 0.05
CLN3-206ENST00000360019 MALRD1Q5VYJ5 2156 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 IGHV3-43A0A0B4J1X8 118 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 KBTBD11-OT1A0A1B0GTJ5 212 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 hADV38S2A0JD32 116 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 F2RL2O00254 374 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 CREBL2O60519 120 aaPredicted RBP15.37■□□□□ 0.05
CLN3-206ENST00000360019 IGHV3-43DP0DP04 118 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 OMGP23515 440 aa15.37■□□□□ 0.05
CLN3-206ENST00000360019 GPR6P46095 362 aaPredicted RBP15.37■□□□□ 0.05
CLN3-206ENST00000360019 TAS2R31P59538 309 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms