RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 DCAF16Q9NXF7 216 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 DSCAMO60469 2012 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 HCFC1P51610 2035 aa11.2□□□□□ -0.62
HMGB1-202ENST00000339872 MEX3AA1L020 520 aaKnown RBP11.19□□□□□ -0.62
HMGB1-202ENST00000339872 L7N2F9 121 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 MPPED1O15442 326 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 PHF1O43189 567 aaPredicted RBP11.19□□□□□ -0.62
HMGB1-202ENST00000339872 CXCL2P19875 107 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 TFF3Q07654 80 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 TMEM187Q14656 261 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 FAM209AQ5JX71 171 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 TBC1D26Q86UD7 250 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 LDLRAD3Q86YD5 345 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 DEFB108BQ8NET1 73 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 OR13A1Q8NGR1 328 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 FAM222BQ8WU58 562 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 GALMQ96C23 342 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 SNX22Q96L94 193 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 EGLN1Q9GZT9 426 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 SEBOXQ9HB31 216 aaPredicted RBP11.19□□□□□ -0.62
HMGB1-202ENST00000339872 HMSDA8MTL9 139 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 HBZP02008 142 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 ROS1P08922 2347 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 GNLYP22749 145 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 IL2RGP31785 369 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 C6orf183Q5T699 404 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 OR10V1Q8NGI7 309 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 OR10C1Q96KK4 312 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 TP53RKQ96S44 253 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 GPHA2Q96T91 129 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 NMES1Q9C002 83 aa11.19□□□□□ -0.62
HMGB1-202ENST00000339872 CISD1Q9NZ45 108 aaKnown RBP11.19□□□□□ -0.62
HMGB1-202ENST00000339872 C3orf85A0A1B0GTC6 90 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 LRRC30A6NM36 301 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 MGST3O14880 152 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 SELLP14151 372 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 SSTR5P35346 364 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 CEACAM6P40199 344 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 LUMP51884 338 aaPredicted RBP11.18□□□□□ -0.62
HMGB1-202ENST00000339872 RND3P61587 244 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 CYCSP99999 105 aaKnown RBP11.18□□□□□ -0.62
HMGB1-202ENST00000339872 PAX5Q02548 391 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 STUMQ69YW2 141 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 C11orf87Q6NUJ2 197 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 LIAT1Q6ZQX7 453 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 CMTM1Q8IZ96 169 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 GLYATL2Q8WU03 294 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 PARP12Q9H0J9 701 aaKnown RBP11.18□□□□□ -0.62
HMGB1-202ENST00000339872 RBM7Q9Y580 266 aaKnown RBP11.18□□□□□ -0.62
HMGB1-202ENST00000339872 MAB21L2Q9Y586 359 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 KALRNO60229 2985 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 K7N7A8 449 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 TNFSF12O43508 249 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 HEXAP06865 529 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 EFNB3Q15768 340 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 MEX3BQ6ZN04 569 aaKnown RBP11.18□□□□□ -0.62
HMGB1-202ENST00000339872 LILRB1Q8NHL6 650 aaPredicted RBP11.18□□□□□ -0.62
HMGB1-202ENST00000339872 VRK1Q99986 396 aaPredicted RBP11.18□□□□□ -0.62
HMGB1-202ENST00000339872 DCTN5Q9BTE1 182 aa11.18□□□□□ -0.62
HMGB1-202ENST00000339872 FBXO9Q9UK97 447 aaPredicted RBP11.18□□□□□ -0.62
HMGB1-202ENST00000339872 A0A1B0GW55 424 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 ODAMA1E959 279 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 B9A039 149 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 MPC2O95563 127 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 IFNA21P01568 189 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 GYPAP02724 150 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 DUX4L2P0CJ85 424 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 DUX4L3P0CJ86 424 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 DUX4L4P0CJ87 422 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 DUX4L5P0CJ88 424 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 DUX4L6P0CJ89 424 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 DUX4L7P0CJ90 424 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 EDDM3BP56851 147 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 MST1LQ2TV78 715 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 C4orf17Q53FE4 359 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 GGNBP1Q5YKI7 109 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 DUX4L9Q6RFH8 374 aaPredicted RBP11.17□□□□□ -0.62
HMGB1-202ENST00000339872 ZNF546Q86UE3 836 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 ZNF561Q8N587 486 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 THAP6Q8TBB0 222 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 ARL11Q969Q4 196 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 MSI2Q96DH6 328 aaKnown RBP11.17□□□□□ -0.62
HMGB1-202ENST00000339872 C2orf50Q96LR7 162 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 MS4A5Q9H3V2 200 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 DUX4Q9UBX2 424 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 KCNS2Q9ULS6 477 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 PKDREJQ9NTG1 2253 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 DEFB108AA8MXU0 73 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 ZG16O60844 167 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 OR8U9P0C7N5 309 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 MUC1P15941 1255 aaPredicted RBP11.17□□□□□ -0.62
HMGB1-202ENST00000339872 PSMB6P28072 239 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 S100GP29377 79 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 LGI3Q8N145 548 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 OR52L2PQ8NGH6 319 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 OR8U1Q8NH10 309 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 NINJ1Q92982 152 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 LURAP1Q96LR2 239 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 GSKIPQ9P0R6 139 aa11.17□□□□□ -0.62
HMGB1-202ENST00000339872 UBE2J1Q9Y385 318 aaPredicted RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms