RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 RPEQ96AT9 228 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 OR4F4Q96R69 305 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 CHCHD3Q9NX63 227 aaKnown RBP8.61□□□□□ -1.03
VPS39-208ENST00000564994 CNOT2Q9NZN8 540 aaKnown RBP8.61□□□□□ -1.03
VPS39-208ENST00000564994 PSORS1C1Q9UIG5 152 aa8.61□□□□□ -1.03
VPS39-208ENST00000564994 AMMECR1Q9Y4X0 333 aaPredicted RBP8.61□□□□□ -1.03
VPS39-208ENST00000564994 TMEM30CPA0ZSE6 113 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 EFCAB10A6NFE3 127 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 ANKRD65E5RJM6 399 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 CASQ2O14958 399 aaPredicted RBP8.6□□□□□ -1.03
VPS39-208ENST00000564994 ZNF780AO75290 641 aaPredicted RBP8.6□□□□□ -1.03
VPS39-208ENST00000564994 MT-ND4P03905 459 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 FAM106CPP0CH98 169 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 GTF2F2P13984 249 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 MADCAM1Q13477 382 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 MED21Q13503 144 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 ATAD3CQ5T2N8 411 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 ZNF497Q6ZNH5 498 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 AHSA2Q719I0 299 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 CENPVQ7Z7K6 275 aaPredicted RBP8.6□□□□□ -1.03
VPS39-208ENST00000564994 LINC00596Q86U02 117 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 THNSL2Q86YJ6 484 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 C8orf59Q8N0T1 100 aaPredicted RBP8.6□□□□□ -1.03
VPS39-208ENST00000564994 CCDC107Q8WV48 283 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 DERL3Q96Q80 235 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 S100A13Q99584 98 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 PLCXD1Q9NUJ7 323 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 FKBP14Q9NWM8 211 aa8.6□□□□□ -1.03
VPS39-208ENST00000564994 PAK1IP1Q9NWT1 392 aaPredicted RBP8.6□□□□□ -1.03
VPS39-208ENST00000564994 RCC2Q9P258 522 aaKnown RBP8.6□□□□□ -1.03
VPS39-208ENST00000564994 MRPS28Q9Y2Q9 187 aaKnown RBP8.6□□□□□ -1.03
VPS39-208ENST00000564994 M0QZK8 103 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 MAS1P04201 325 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 CELP19835 753 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 GZMHP20718 246 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 RAB7AP51149 207 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 WNT4P56705 351 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 LOXL3P58215 753 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 TAS2R43P59537 309 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 INSL4Q14641 139 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 C9orf152Q5JTZ5 239 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 GLIPR1L1Q6UWM5 242 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 SLC16A12Q6ZSM3 486 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 JAGN1Q8N5M9 183 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 NANOGP1Q8N7R0 232 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 TMEM104Q8NE00 496 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 BPIFB6Q8NFQ5 453 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 OR10X1Q8NGY0 326 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 MYDGFQ969H8 173 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 ARL11Q969Q4 196 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 BANF2Q9H503 90 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 PCDHB16Q9NRJ7 776 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 CKLFQ9UBR5 152 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 MOB4Q9Y3A3 225 aa8.59□□□□□ -1.03
VPS39-208ENST00000564994 DNAH9Q9NYC9 4486 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 IGHV3-43A0A0B4J1X8 118 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 TCRBV4S1A1TA0A5B7 111 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 C12orf77C9JDV5 145 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 SDCBPO00560 298 aaPredicted RBP8.58□□□□□ -1.04
VPS39-208ENST00000564994 HSD17B6O14756 317 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 MYL12BO14950 172 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 ORC5O43913 435 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 IGKV1D-33P01593 117 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 IGKV1-33P01594 117 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 CD1AP06126 327 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 IGHV3-43DP0DP04 118 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 TMEM11P17152 192 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 VHLP40337 213 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 REG1BP48304 166 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 GP2P55259 537 aaKnown RBP8.58□□□□□ -1.04
VPS39-208ENST00000564994 ZNF816Q0VGE8 651 aaPredicted RBP8.58□□□□□ -1.04
VPS39-208ENST00000564994 GPR176Q14439 515 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 HES1Q14469 280 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 HNF4GQ14541 408 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 SIGIRRQ6IA17 410 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 OR8H3Q8N146 312 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 GAPTQ8N292 157 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 STX19Q8N4C7 294 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 LINC00311Q8N616 119 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 C5orf56Q8N8D9 126 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 WFDC9Q8NEX5 89 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 OR52M1Q8NGK5 317 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 NEK7Q8TDX7 302 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 TFAP2CQ92754 450 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 ST6GALNAC6Q969X2 333 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 RBMXL1Q96E39 390 aaKnown RBP8.58□□□□□ -1.04
VPS39-208ENST00000564994 MRPS24Q96EL2 167 aaKnown RBP8.58□□□□□ -1.04
VPS39-208ENST00000564994 GFOD1Q9NXC2 390 aa8.58□□□□□ -1.04
VPS39-208ENST00000564994 TSSC4Q9Y5U2 329 aaPredicted RBP8.58□□□□□ -1.04
VPS39-208ENST00000564994 IGHV3-72A0A0B4J1Y9 119 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 IGHV1-3A0A0C4DH29 117 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 AIPO00170 330 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 CCRL2O00421 344 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 SLC31A2O15432 143 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 EBI3Q14213 229 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 FAM27D1Q5T7N8 215 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 SYT6Q5T7P8 510 aaPredicted RBP8.57□□□□□ -1.04
VPS39-208ENST00000564994 AWAT2Q6E213 333 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 RAB12Q6IQ22 244 aa8.57□□□□□ -1.04
VPS39-208ENST00000564994 Q6ZPA2 131 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms