RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 FDCSPQ8NFU4 85 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 OR10V1Q8NGI7 309 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 OR1J1Q8NGS3 322 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 LILRB1Q8NHL6 650 aaPredicted RBP12.62□□□□□ -0.39
NUP54-217ENST00000514987 TLNRD1Q9H1K6 362 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 WFDC1Q9HC57 220 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 LYRM2Q9NU23 88 aaPredicted RBP12.62□□□□□ -0.39
NUP54-217ENST00000514987 PCNX2A6NKB5 2137 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 GPR179Q6PRD1 2367 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 A0A1B0GU03 582 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 PRR33A8MZF0 331 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 UMAD1C9J7I0 102 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.61□□□□□ -0.39
NUP54-217ENST00000514987 SLC33A1O00400 549 aaPredicted RBP12.61□□□□□ -0.39
NUP54-217ENST00000514987 NUPL2O15504 423 aaKnown RBP12.61□□□□□ -0.39
NUP54-217ENST00000514987 HSPA12AO43301 675 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 NXPH2O95156 264 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 SERPINE2P07093 398 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 COX5AP20674 150 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 CAMLGP49069 296 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 SRSF3P84103 164 aaKnown RBP12.61□□□□□ -0.39
NUP54-217ENST00000514987 PMP22Q01453 160 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 NHLH2Q02577 135 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 GUCA2BQ16661 112 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 DHRS7BQ6IAN0 325 aaPredicted RBP12.61□□□□□ -0.39
NUP54-217ENST00000514987 C20orf204Q6ZNR8 217 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 VASH2Q86V25 355 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 C17orf78Q8N4C9 275 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 LFNGQ8NES3 379 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 SLC25A40Q8TBP6 338 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 OBP2BQ9NPH6 170 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 PLA2G2EQ9NZK7 142 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 CACFD1Q9UGQ2 172 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 ERRFI1Q9UJM3 462 aaPredicted RBP12.61□□□□□ -0.39
NUP54-217ENST00000514987 WIPI2Q9Y4P8 454 aa12.61□□□□□ -0.39
NUP54-217ENST00000514987 FAM74A7A6NL05 159 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 WRBO00258 174 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 LYZL6O75951 148 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 OR2H2O95918 312 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 CELA3BP08861 270 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 CD200P41217 278 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 ARHGDIBP52566 201 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 FAM74A3Q4VXF1 159 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 LSM10Q969L4 123 aaKnown RBP12.6□□□□□ -0.39
NUP54-217ENST00000514987 BSCL2Q96G97 398 aaPredicted RBP12.6□□□□□ -0.39
NUP54-217ENST00000514987 C19orf12Q9NSK7 152 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 MBNL3Q9NUK0 354 aaKnown RBP12.6□□□□□ -0.39
NUP54-217ENST00000514987 TAAR3PQ9P1P4 343 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 NDRG3Q9UGV2 375 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 TRAPPC2LQ9UL33 140 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 KPTNQ9Y664 436 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 AHRRA9YTQ3 701 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 SIGLEC5O15389 551 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 H2AFB1P0C5Y9 115 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 SFTA3P0C7M3 94 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 POLR2GP62487 172 aaKnown RBP eCLIP12.6□□□□□ -0.39
NUP54-217ENST00000514987 PSG7Q13046 419 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 ZNF154Q13106 437 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 SMUG1Q53HV7 270 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 WDR86Q86TI4 376 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 TMEM252Q8N6L7 170 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 KDF1Q8NAX2 398 aaPredicted RBP12.6□□□□□ -0.39
NUP54-217ENST00000514987 OR8G5Q8NG78 346 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 GNPNAT1Q96EK6 184 aaPredicted RBP12.6□□□□□ -0.39
NUP54-217ENST00000514987 PBDC1Q9BVG4 233 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 SMDT1Q9H4I9 107 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 TMEM231Q9H6L2 316 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 FAM96BQ9Y3D0 163 aa12.6□□□□□ -0.39
NUP54-217ENST00000514987 MED12LQ86YW9 2145 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 FAM24AA6NFZ4 105 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 RNF212BA8MTL3 300 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 SIRPB1O00241 398 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 SSSCA1O60232 199 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 IGKV3-15P01624 115 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 PRH1P02810 166 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 HEXAP06865 529 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 CD80P33681 288 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 SNCAP37840 140 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 EIF2S3P41091 472 aaKnown RBP12.59□□□□□ -0.39
NUP54-217ENST00000514987 KIR2DL2P43627 348 aaPredicted RBP12.59□□□□□ -0.39
NUP54-217ENST00000514987 NOVA1P51513 510 aaKnown RBP12.59□□□□□ -0.39
NUP54-217ENST00000514987 MZT1Q08AG7 82 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 MYPOPQ86VE0 399 aaPredicted RBP12.59□□□□□ -0.39
NUP54-217ENST00000514987 GCNT2Q8N0V5 402 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 CNEP1R1Q8N9A8 125 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 PLPPR1Q8TBJ4 325 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 KLF14Q8TD94 323 aaPredicted RBP12.59□□□□□ -0.39
NUP54-217ENST00000514987 RAB40CQ96S21 281 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 CXXC4Q9H2H0 198 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 HES4Q9HCC6 221 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 LIN7CQ9NUP9 197 aaKnown RBP12.59□□□□□ -0.39
NUP54-217ENST00000514987 KCNIP1Q9NZI2 227 aa12.59□□□□□ -0.39
NUP54-217ENST00000514987 SPAARA0A1B0GVQ0 90 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 A0A1B0GW64 132 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 IGSF23A1L1A6 192 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 CDIPTO14735 213 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 OR8U9P0C7N5 309 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 LMO1P25800 156 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 RPL23AP62750 156 aaKnown RBP12.58□□□□□ -0.4
NUP54-217ENST00000514987 ZNF616Q08AN1 781 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms