RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SMPD2O60906 423 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 WISP1O95388 367 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 OR13C7P0DN81 318 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 AADACP22760 399 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 ANOS1P23352 680 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 CCR5P51681 352 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 CCL20P78556 96 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 NHLH2Q02577 135 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 TLE1Q04724 770 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 IAH1Q2TAA2 248 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 OR4X1Q8NH49 305 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 FAM213BQ8TBF2 198 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 SNHG12Q9BXW3 62 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 SAMD10Q9BYL1 202 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 YAE1D1Q9NRH1 226 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 ATP23Q9Y6H3 246 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 PPP1R2P9O14990 202 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 SIGLEC5O15389 551 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 PHF1O43189 567 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 MLNRO43193 412 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 HLA-DRB3P79483 266 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 COTL1Q14019 142 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 SOHLH1Q5JUK2 328 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 WDR74Q6RFH5 385 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF705AQ6ZN79 300 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM182Q6ZP80 229 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 Q8N976 141 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF418Q8TF45 676 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 MISP3Q96FF7 219 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 UBTD1Q9HAC8 227 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 GNG13Q9P2W3 67 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 EML5Q05BV3 1969 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 F6UZH7 168 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 J3QW42 95 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 GJA4P35212 333 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 SSR4P51571 173 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 NDUFA6P56556 154 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 PIGTQ969N2 578 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 MBD6Q96DN6 1003 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 BANF2Q9H503 90 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 IGKV1D-43A0A0B4J1Z2 117 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 H3BQ15 152 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 IDH3GP51553 393 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 CARD18P57730 90 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF266Q14584 549 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 BRICD5Q6PL45 260 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 PRSS41Q7RTY9 318 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 WFDC8Q8IUA0 241 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 PINX1Q96BK5 328 aaKnown RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 RBM14Q96PK6 669 aaKnown RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 SLC25A31Q9H0C2 315 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 GPR173Q9NS66 373 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 SPAARA0A1B0GVQ0 90 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 LINC01553A4QN01 128 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 LRRC30A6NM36 301 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 K7EP13 123 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 SSSCA1O60232 199 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 TESK1Q15569 626 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 WIPI1Q5MNZ9 446 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 CDPF1Q6NVV7 123 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM123Q8N131 208 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 MRPS28Q9Y2Q9 187 aaKnown RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 IGSF23A1L1A6 192 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 GALR2O43603 387 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 KBTBD11O94819 623 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 SERPINE2P07093 398 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 BCL2P10415 239 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 CD200P41217 278 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 PTGDSP41222 190 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 CAPZBP47756 277 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 Q0VG73 95 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 DCAF10Q5QP82 559 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM240Q5SV17 173 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 LGI3Q8N145 548 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 TCTEX1D1Q8N7M0 179 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF385AQ96PM9 386 aaKnown RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 WSB2Q9NYS7 404 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 CGGBP1Q9UFW8 167 aaPredicted RBP4.61□□□□□ -1.67
SYNE1-220ENST00000471834 FZR1Q9UM11 496 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 WSB1Q9Y6I7 421 aa4.61□□□□□ -1.67
SYNE1-220ENST00000471834 SPTY2D1-AS1A0A0U1RR47 76 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 A0A1W2PPV4 95 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 RBFOX3A6NFN3 312 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 PRSS46E5RG02 174 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 IL6RP08887 468 aaPredicted RBP4.6□□□□□ -1.67
SYNE1-220ENST00000471834 DEFA4P12838 97 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 ELLP55199 621 aaPredicted RBP4.6□□□□□ -1.67
SYNE1-220ENST00000471834 FAM3BP58499 235 aaPredicted RBP4.6□□□□□ -1.67
SYNE1-220ENST00000471834 UBE2KP61086 200 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 PAX2Q02962 417 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 KMT5CQ86Y97 462 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 C3orf56Q8N813 242 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 C2CD4CQ8TF44 421 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 PATZ1Q9HBE1 687 aaKnown RBP4.6□□□□□ -1.67
SYNE1-220ENST00000471834 SLCO1B1Q9Y6L6 691 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 LOC102723996A0A087X1L8 192 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 NME2P1O60361 137 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 AKR1C1Q04828 323 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 KIAA0141Q14154 515 aaPredicted RBP4.6□□□□□ -1.67
SYNE1-220ENST00000471834 EDDM3AQ14507 147 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms