RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 FAM192AQ9GZU8 254 aa11.66□□□□□ -0.54
RPS28-201ENST00000417088 IFT22Q9H7X7 185 aa11.66□□□□□ -0.54
RPS28-201ENST00000417088 FAM118AQ9NWS6 357 aa11.66□□□□□ -0.54
RPS28-201ENST00000417088 ST3GAL6Q9Y274 331 aa11.66□□□□□ -0.54
RPS28-201ENST00000417088 C15orf65H3BRN8 121 aa11.65□□□□□ -0.54
RPS28-201ENST00000417088 CCL24O00175 119 aa11.65□□□□□ -0.54
RPS28-201ENST00000417088 GPR12P47775 334 aa11.65□□□□□ -0.54
RPS28-201ENST00000417088 RBM11P57052 281 aaKnown RBP11.65□□□□□ -0.54
RPS28-201ENST00000417088 DGCR2P98153 550 aa11.65□□□□□ -0.54
RPS28-201ENST00000417088 NHLRC3Q5JS37 347 aa11.65□□□□□ -0.54
RPS28-201ENST00000417088 FAM53AQ6NSI3 398 aaPredicted RBP11.65□□□□□ -0.54
RPS28-201ENST00000417088 TGIF2LXQ8IUE1 241 aa11.65□□□□□ -0.54
RPS28-201ENST00000417088 IZUMO1Q8IYV9 350 aa11.65□□□□□ -0.54
RPS28-201ENST00000417088 Q8N9W7 124 aa11.65□□□□□ -0.54
RPS28-201ENST00000417088 Q96MT0 163 aa11.65□□□□□ -0.54
RPS28-201ENST00000417088 WWC2-AS2Q96NR7 200 aa11.65□□□□□ -0.54
RPS28-201ENST00000417088 METTL9Q9H1A3 318 aa11.65□□□□□ -0.54
RPS28-201ENST00000417088 ABCG5Q9H222 651 aa11.65□□□□□ -0.54
RPS28-201ENST00000417088 LIN7CQ9NUP9 197 aaKnown RBP11.65□□□□□ -0.54
RPS28-201ENST00000417088 MRPS18AQ9NVS2 196 aaKnown RBP11.65□□□□□ -0.54
RPS28-201ENST00000417088 IL36GQ9NZH8 169 aa11.65□□□□□ -0.54
RPS28-201ENST00000417088 ING4Q9UNL4 249 aa11.65□□□□□ -0.54
RPS28-201ENST00000417088 TMEM30CPA0ZSE6 113 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 NCBP2LA6PVI3 153 aaKnown RBP11.64□□□□□ -0.55
RPS28-201ENST00000417088 AP4M1O00189 453 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 MPZL2O60487 215 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 OR7C1O76099 320 aaPredicted RBP11.64□□□□□ -0.55
RPS28-201ENST00000417088 RPLP1P05386 114 aaKnown RBP11.64□□□□□ -0.55
RPS28-201ENST00000417088 LIMS3P0CW19 117 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 LIMS4P0CW20 117 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 DCTN2Q13561 401 aaKnown RBP11.64□□□□□ -0.55
RPS28-201ENST00000417088 PNLIPRP3Q17RR3 467 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 XAF1Q6GPH4 301 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 TEX38Q6PEX7 206 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 LINC00311Q8N616 119 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 TMEM104Q8NE00 496 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 OR52M1Q8NGK5 317 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 OR2T10Q8NGZ9 312 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 OR52N1Q8NH53 320 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 UBALD1Q8TB05 177 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 GPR148Q8TDV2 347 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 TFAP2CQ92754 450 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 ARL11Q969Q4 196 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 ST6GALNAC6Q969X2 333 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 DCLRE1BQ9H816 532 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 PLSCR3Q9NRY6 295 aa11.64□□□□□ -0.55
RPS28-201ENST00000417088 ZMAT5Q9UDW3 170 aaKnown RBP11.64□□□□□ -0.55
RPS28-201ENST00000417088 SDCBPO00560 298 aaPredicted RBP11.63□□□□□ -0.55
RPS28-201ENST00000417088 GEMIN2O14893 280 aaKnown RBP11.63□□□□□ -0.55
RPS28-201ENST00000417088 CSTBP04080 98 aaKnown RBP11.63□□□□□ -0.55
RPS28-201ENST00000417088 CD2P06729 351 aa11.63□□□□□ -0.55
RPS28-201ENST00000417088 KLHL22Q53GT1 634 aa11.63□□□□□ -0.55
RPS28-201ENST00000417088 LCNL1Q6ZST4 164 aa11.63□□□□□ -0.55
RPS28-201ENST00000417088 C8orf31Q8N9H6 132 aa11.63□□□□□ -0.55
RPS28-201ENST00000417088 CCDC107Q8WV48 283 aa11.63□□□□□ -0.55
RPS28-201ENST00000417088 APH1BQ8WW43 257 aa11.63□□□□□ -0.55
RPS28-201ENST00000417088 RTN4IP1Q8WWV3 396 aaPredicted RBP11.63□□□□□ -0.55
RPS28-201ENST00000417088 TMEM106AQ96A25 262 aa11.63□□□□□ -0.55
RPS28-201ENST00000417088 SLC29A1Q99808 456 aa11.63□□□□□ -0.55
RPS28-201ENST00000417088 TMEM138Q9NPI0 162 aa11.63□□□□□ -0.55
RPS28-201ENST00000417088 GFOD1Q9NXC2 390 aa11.63□□□□□ -0.55
RPS28-201ENST00000417088 RPL36Q9Y3U8 105 aaKnown RBP11.63□□□□□ -0.55
RPS28-201ENST00000417088 IGHV3-43A0A0B4J1X8 118 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 ZNF736B4DX44 427 aaPredicted RBP11.62□□□□□ -0.55
RPS28-201ENST00000417088 ORC5O43913 435 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 RAMP3O60896 148 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 MT-ND4P03905 459 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 IGHV3-43DP0DP04 118 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 CD1BP29016 333 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 ZNF93P35789 620 aaPredicted RBP11.62□□□□□ -0.55
RPS28-201ENST00000417088 GP2P55259 537 aaKnown RBP11.62□□□□□ -0.55
RPS28-201ENST00000417088 RAB25P57735 213 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 FOXE3Q13461 319 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 KIR2DS1Q14954 304 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 DEFB136Q30KP8 78 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 ATAD3CQ5T2N8 411 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 DDI2Q5TDH0 399 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 ZFP1Q6P2D0 407 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 RPL22L1Q6P5R6 122 aaKnown RBP11.62□□□□□ -0.55
RPS28-201ENST00000417088 ZNF497Q6ZNH5 498 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 RNF152Q8N8N0 203 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 ORAI1Q96D31 301 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 S1PR3Q99500 378 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 GON7Q9BXV9 100 aa11.62□□□□□ -0.55
RPS28-201ENST00000417088 FGF20Q9NP95 211 aaPredicted RBP11.62□□□□□ -0.55
RPS28-201ENST00000417088 SIRT4Q9Y6E7 314 aaPredicted RBP11.62□□□□□ -0.55
RPS28-201ENST00000417088 LOC100130705A0A1B0GUX0 176 aa11.61□□□□□ -0.55
RPS28-201ENST00000417088 A0A1W2PP11 408 aa11.61□□□□□ -0.55
RPS28-201ENST00000417088 SLC31A2O15432 143 aa11.61□□□□□ -0.55
RPS28-201ENST00000417088 MOSP00540 346 aa11.61□□□□□ -0.55
RPS28-201ENST00000417088 ELANEP08246 267 aa11.61□□□□□ -0.55
RPS28-201ENST00000417088 SERPINA2P20848 420 aa11.61□□□□□ -0.55
RPS28-201ENST00000417088 BDKRB2P30411 391 aa11.61□□□□□ -0.55
RPS28-201ENST00000417088 CDX1P47902 265 aaPredicted RBP11.61□□□□□ -0.55
RPS28-201ENST00000417088 LUMP51884 338 aaPredicted RBP11.61□□□□□ -0.55
RPS28-201ENST00000417088 PPP3R1P63098 170 aa11.61□□□□□ -0.55
RPS28-201ENST00000417088 GPR50Q13585 617 aa11.61□□□□□ -0.55
RPS28-201ENST00000417088 MPV17LQ2QL34 196 aa11.61□□□□□ -0.55
RPS28-201ENST00000417088 CCDC58Q4VC31 144 aa11.61□□□□□ -0.55
RPS28-201ENST00000417088 CXorf66Q5JRM2 361 aaPredicted RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms