RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 ZNF552Q9H707 407 aaPredicted RBP17.65■□□□□ 0.42
CLK3-202ENST00000395066 PRDM6Q9NQX0 595 aa17.65■□□□□ 0.42
CLK3-202ENST00000395066 ZNF391Q9UJN7 358 aa17.65■□□□□ 0.42
CLK3-202ENST00000395066 ZNF732B4DXR9 585 aa17.65■□□□□ 0.42
CLK3-202ENST00000395066 GFRA1P56159 465 aa17.65■□□□□ 0.42
CLK3-202ENST00000395066 SRPXP78539 464 aa17.65■□□□□ 0.42
CLK3-202ENST00000395066 CDPF1Q6NVV7 123 aa17.65■□□□□ 0.42
CLK3-202ENST00000395066 CYB561D1Q8N8Q1 229 aa17.65■□□□□ 0.42
CLK3-202ENST00000395066 SCAF4O95104 1147 aaKnown RBP17.64■□□□□ 0.41
CLK3-202ENST00000395066 CYB561P49447 251 aa17.64■□□□□ 0.41
CLK3-202ENST00000395066 ERVFRD-1P60508 538 aa17.64■□□□□ 0.41
CLK3-202ENST00000395066 ZNF154Q13106 437 aa17.64■□□□□ 0.41
CLK3-202ENST00000395066 ICAM4Q14773 271 aa17.64■□□□□ 0.41
CLK3-202ENST00000395066 C17orf78Q8N4C9 275 aa17.64■□□□□ 0.41
CLK3-202ENST00000395066 TMEM105Q8N8V8 129 aa17.64■□□□□ 0.41
CLK3-202ENST00000395066 SLC25A31Q9H0C2 315 aa17.64■□□□□ 0.41
CLK3-202ENST00000395066 LYRM2Q9NU23 88 aaPredicted RBP17.64■□□□□ 0.41
CLK3-202ENST00000395066 TRAV39A0A0B4J263 110 aa17.64■□□□□ 0.41
CLK3-202ENST00000395066 HS3ST1O14792 307 aa17.64■□□□□ 0.41
CLK3-202ENST00000395066 FOXO1Q12778 655 aa17.64■□□□□ 0.41
CLK3-202ENST00000395066 SPNS3Q6ZMD2 512 aa17.64■□□□□ 0.41
CLK3-202ENST00000395066 CT55Q8WUE5 264 aa17.64■□□□□ 0.41
CLK3-202ENST00000395066 TVP23CQ96ET8 276 aa17.64■□□□□ 0.41
CLK3-202ENST00000395066 A0A0G2JRQ6 117 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 HSPB1P04792 205 aaKnown RBP17.63■□□□□ 0.41
CLK3-202ENST00000395066 VAMP2P63027 116 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 ESPL1Q14674 2120 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 C3AR1Q16581 482 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 RDH5Q92781 318 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 CPNE4Q96A23 557 aaPredicted RBP17.63■□□□□ 0.41
CLK3-202ENST00000395066 TMEM56Q96MV1 263 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 SIGLEC12Q96PQ1 595 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 NIPSNAP3BQ9BS92 247 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 PRDM14Q9GZV8 571 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 WSB1Q9Y6I7 421 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 TMEM56-RWDD3S4R434 201 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 TGIF2-C20orf24A0A0A6YYL0 155 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 CXorf65A6NEN9 183 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 FAM166BA8MTA8 275 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 HIST1H2BKO60814 126 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 NAPSAO96009 420 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 HIST1H2BJP06899 126 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 HIST1H2BOP23527 126 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 HIST1H2BBP33778 126 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 HIST1H2BDP58876 126 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 HIST1H2BCP62807 126 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 HIST2H2BEQ16778 126 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.63■□□□□ 0.41
CLK3-202ENST00000395066 SP5Q6BEB4 398 aaPredicted RBP17.63■□□□□ 0.41
CLK3-202ENST00000395066 MRPL21Q7Z2W9 205 aaKnown RBP17.63■□□□□ 0.41
CLK3-202ENST00000395066 MYPOPQ86VE0 399 aaPredicted RBP17.63■□□□□ 0.41
CLK3-202ENST00000395066 HIST1H2BHQ93079 126 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 HIST1H2BNQ99877 126 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 HIST1H2BMQ99879 126 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 REPIN1Q9BWE0 567 aaKnown RBP17.63■□□□□ 0.41
CLK3-202ENST00000395066 SIRT7Q9NRC8 400 aa17.63■□□□□ 0.41
CLK3-202ENST00000395066 CHST1O43916 411 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 DEFA6Q01524 100 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 ZNF506Q5JVG8 444 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 COLCA1Q6ZS62 124 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 VASH2Q86V25 355 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 OR10D4PQ8NGN7 298 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 UBALD1Q8TB05 177 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 PLPPR1Q8TBJ4 325 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 PSMF1Q92530 271 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 SPIN2AQ99865 258 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 SPIN2BQ9BPZ2 258 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 PLSCR2Q9NRY7 297 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 LRFN1Q9P244 771 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 SEC14L6B5MCN3 397 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 FGF12P61328 243 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 P4HA3Q7Z4N8 544 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 OR51H1Q8NH63 302 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 GNPNAT1Q96EK6 184 aaPredicted RBP17.62■□□□□ 0.41
CLK3-202ENST00000395066 FAM86C1Q9NVL1 165 aa17.62■□□□□ 0.41
CLK3-202ENST00000395066 DIDO1Q9BTC0 2240 aaKnown RBP17.61■□□□□ 0.41
CLK3-202ENST00000395066 ARGFXA6NJG6 315 aa17.61■□□□□ 0.41
CLK3-202ENST00000395066 CYB5BO43169 146 aa17.61■□□□□ 0.41
CLK3-202ENST00000395066 GPX4P36969 197 aaPredicted RBP17.61■□□□□ 0.41
CLK3-202ENST00000395066 FAM185AQ8N0U4 392 aa17.61■□□□□ 0.41
CLK3-202ENST00000395066 THOC3Q96J01 351 aaKnown RBP17.61■□□□□ 0.41
CLK3-202ENST00000395066 ASPMQ8IZT6 3477 aa17.61■□□□□ 0.41
CLK3-202ENST00000395066 GLIPR1P48060 266 aa17.61■□□□□ 0.41
CLK3-202ENST00000395066 TRA2AQ13595 282 aaKnown RBP eCLIP17.61■□□□□ 0.41
CLK3-202ENST00000395066 NMSQ5H8A3 153 aa17.61■□□□□ 0.41
CLK3-202ENST00000395066 ZDHHC23Q8IYP9 409 aa17.61■□□□□ 0.41
CLK3-202ENST00000395066 AKR1C8PQ5T2L2 129 aa17.6■□□□□ 0.41
CLK3-202ENST00000395066 WDR5BQ86VZ2 330 aa17.6■□□□□ 0.41
CLK3-202ENST00000395066 CLDND2Q8NHS1 167 aa17.6■□□□□ 0.41
CLK3-202ENST00000395066 IGHV3-64DA0A0J9YX35 117 aa17.6■□□□□ 0.41
CLK3-202ENST00000395066 TRGC2P03986 189 aa17.6■□□□□ 0.41
CLK3-202ENST00000395066 ZXDAP98168 799 aa17.6■□□□□ 0.41
CLK3-202ENST00000395066 TCEAL6Q6IPX3 200 aa17.6■□□□□ 0.41
CLK3-202ENST00000395066 SLC35E3Q7Z769 313 aa17.6■□□□□ 0.41
CLK3-202ENST00000395066 RBMXL1Q96E39 390 aaKnown RBP17.6■□□□□ 0.41
CLK3-202ENST00000395066 TAAR3PQ9P1P4 343 aa17.6■□□□□ 0.41
CLK3-202ENST00000395066 TRAPPC2LH3BP13 241 aa17.59■□□□□ 0.41
CLK3-202ENST00000395066 PPP1R2P9O14990 202 aa17.59■□□□□ 0.41
CLK3-202ENST00000395066 RPL23AP62750 156 aaKnown RBP17.59■□□□□ 0.41
CLK3-202ENST00000395066 NKX6-1P78426 367 aaPredicted RBP17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms