RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 MISP3Q96FF7 219 aa15.81■□□□□ 0.12
CCDC3-201ENST00000378825 IAPPP10997 89 aa15.81■□□□□ 0.12
CCDC3-201ENST00000378825 HMGB3O15347 200 aaKnown RBP15.81■□□□□ 0.12
CCDC3-201ENST00000378825 CCL2P13500 99 aa15.81■□□□□ 0.12
CCDC3-201ENST00000378825 ZNF385CQ66K41 422 aaPredicted RBP15.81■□□□□ 0.12
CCDC3-201ENST00000378825 C20orf204Q6ZNR8 217 aa15.81■□□□□ 0.12
CCDC3-201ENST00000378825 REC114Q7Z4M0 266 aa15.81■□□□□ 0.12
CCDC3-201ENST00000378825 A0A1W2PR80 420 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 IFNL4K9M1U5 179 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 VDAC1P21796 283 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 IGFBP7Q16270 282 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 ZNF787Q6DD87 383 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 RBMXL1Q96E39 390 aaKnown RBP15.8■□□□□ 0.12
CCDC3-201ENST00000378825 SPIN2AQ99865 258 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 SPIN2BQ9BPZ2 258 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 WNT5BQ9H1J7 359 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 TCFL5Q9UL49 500 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 KIAA1549Q9HCM3 1950 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 URB1O60287 2271 aaKnown RBP15.8■□□□□ 0.12
CCDC3-201ENST00000378825 TK1P04183 234 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 NR2C1P13056 603 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 APLNRP35414 380 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 FUT6P51993 359 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 PRSS8Q16651 343 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 LYSMD4Q5XG99 296 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 YRDCQ86U90 279 aaKnown RBP15.8■□□□□ 0.12
CCDC3-201ENST00000378825 GPR137CQ8N3F9 429 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 OR4X1Q8NH49 305 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 CA5BP1Q8WTZ4 195 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 HLA-CQ95604 372 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 CABLES2Q9BTV7 478 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 TMEM38BQ9NVV0 291 aa15.8■□□□□ 0.12
CCDC3-201ENST00000378825 NCKAP5O14513 1909 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 DOCK11Q5JSL3 2073 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 TRAV39A0A0B4J263 110 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 A0A0G2JMM0 328 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 A0A1W2PPB8 328 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 A0A1W2PRS3 328 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 OR6C6A6NF89 314 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 KIR3DP1A8MWS1 328 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 METTL15P1P0C7V9 234 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 UCP1P25874 307 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 OR1K1Q8NGR3 316 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 NEK7Q8TDX7 302 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 GPR146Q96CH1 333 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 Q9N2K0 584 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 LRFN1Q9P244 771 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 ZDBF2Q9HCK1 2354 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 ELOA3CA0A087WX78 387 aaPredicted RBP15.79■□□□□ 0.12
CCDC3-201ENST00000378825 A0A087WZY1 265 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 CLDN34H7C241 214 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 BCL2P10415 239 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 LIFP15018 202 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 CCNOP22674 350 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 PKIAP61925 76 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 CLN3Q13286 438 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 UBALD1Q8TB05 177 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 M1APQ8TC57 530 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 DKKL1Q9UK85 242 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 SIT1Q9Y3P8 196 aa15.79■□□□□ 0.12
CCDC3-201ENST00000378825 CEBPZOSA8MTT3 80 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 GALR2O43603 387 aaPredicted RBP15.78■□□□□ 0.12
CCDC3-201ENST00000378825 CEACAM1P13688 526 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 TUBG1P23258 451 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 SRPXP78539 464 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 CEACAM16Q2WEN9 425 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 HLA-BQ31612 363 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 C9orf135Q5VTT2 229 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 POM121Q96HA1 1249 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 ZNF488Q96MN9 340 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 SDF2L1Q9HCN8 221 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 PLSCR2Q9NRY7 297 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 PGLYRP1O75594 196 aaPredicted RBP15.78■□□□□ 0.12
CCDC3-201ENST00000378825 CYB5R3P00387 301 aaPredicted RBP15.78■□□□□ 0.12
CCDC3-201ENST00000378825 PSG2P11465 335 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 RND2P52198 227 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 ELLP55199 621 aaPredicted RBP15.78■□□□□ 0.12
CCDC3-201ENST00000378825 RTP5Q14D33 572 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 HAPLN4Q86UW8 402 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 OR13D1Q8NGV5 346 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 SAP25Q8TEE9 199 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 RCC1LQ96I51 464 aaKnown RBP15.78■□□□□ 0.12
CCDC3-201ENST00000378825 GAB2Q9UQC2 676 aa15.78■□□□□ 0.12
CCDC3-201ENST00000378825 SMCO3A2RU48 225 aa15.77■□□□□ 0.12
CCDC3-201ENST00000378825 C9J4A7 227 aa15.77■□□□□ 0.12
CCDC3-201ENST00000378825 AMBPP02760 352 aa15.77■□□□□ 0.12
CCDC3-201ENST00000378825 GPM6AP51674 278 aa15.77■□□□□ 0.12
CCDC3-201ENST00000378825 COL10A1Q03692 680 aa15.77■□□□□ 0.12
CCDC3-201ENST00000378825 P2RY6Q15077 328 aa15.77■□□□□ 0.12
CCDC3-201ENST00000378825 CPEB3Q8NE35 698 aaKnown RBP15.77■□□□□ 0.12
CCDC3-201ENST00000378825 OR14J1Q9UGF5 321 aa15.77■□□□□ 0.12
CCDC3-201ENST00000378825 KIAA1324LA8MWY0 1029 aaPredicted RBP15.77■□□□□ 0.11
CCDC3-201ENST00000378825 TP53I11O14683 189 aa15.77■□□□□ 0.11
CCDC3-201ENST00000378825 TOX3O15405 576 aaPredicted RBP15.77■□□□□ 0.11
CCDC3-201ENST00000378825 HBE1P02100 147 aa15.77■□□□□ 0.11
CCDC3-201ENST00000378825 CFIP05156 583 aa15.77■□□□□ 0.11
CCDC3-201ENST00000378825 GZMBP10144 247 aa15.77■□□□□ 0.11
CCDC3-201ENST00000378825 BAXQ07812 192 aa15.77■□□□□ 0.11
CCDC3-201ENST00000378825 PCOLCEQ15113 449 aa15.77■□□□□ 0.11
CCDC3-201ENST00000378825 WDR5BQ86VZ2 330 aa15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms