RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 WIPI2Q9Y4P8 454 aa12.48□□□□□ -0.41
TCOF1-202ENST00000377797 ESPL1Q14674 2120 aa12.48□□□□□ -0.41
TCOF1-202ENST00000377797 MFNGO00587 321 aa12.48□□□□□ -0.41
TCOF1-202ENST00000377797 OR2H2O95918 312 aa12.48□□□□□ -0.41
TCOF1-202ENST00000377797 SUB1P53999 127 aaKnown RBP eCLIP12.48□□□□□ -0.41
TCOF1-202ENST00000377797 H3F3CQ6NXT2 135 aa12.48□□□□□ -0.41
TCOF1-202ENST00000377797 C9orf106Q8NAJ2 232 aa12.48□□□□□ -0.41
TCOF1-202ENST00000377797 KCNMB2Q9Y691 235 aa12.48□□□□□ -0.41
TCOF1-202ENST00000377797 UBE2KP61086 200 aa12.48□□□□□ -0.41
TCOF1-202ENST00000377797 ITLN1Q8WWA0 313 aa12.48□□□□□ -0.41
TCOF1-202ENST00000377797 NMES1Q9C002 83 aa12.48□□□□□ -0.41
TCOF1-202ENST00000377797 ARV1Q9H2C2 271 aa12.48□□□□□ -0.41
TCOF1-202ENST00000377797 A0A0U1RQK1 487 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FAM90A10PA6NDY2 464 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FAM90A18PA6NE21 464 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FAM90A16PA6NEW6 464 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FAM90A20PA6NIJ5 464 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FAM90A8PA6NJQ4 464 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FAM90A7PA6NKC0 464 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FAM90A22PA8MWA6 464 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FAM90A12PA8MX19 464 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FAM90A5PA8MXJ8 464 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FAM90A23PA8MXZ1 464 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FAM90A15PP0C7V4 464 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FAM90A13PP0C7W8 464 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FAM90A14PP0C7W9 464 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FAM90A24PP0C7X0 464 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 RAB40CQ96S21 281 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 RAB1BQ9H0U4 201 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 AKAP6Q13023 2319 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 CD37P11049 281 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 SFTPCP11686 197 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 GFRA1P56159 465 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 GNB1P62873 340 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 ACSF3Q4G176 576 aaPredicted RBP12.47□□□□□ -0.41
TCOF1-202ENST00000377797 C1QTNF5Q9BXJ0 243 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 DLL3Q9NYJ7 618 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FBXL17Q9UF56 701 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FOXD3Q9UJU5 478 aaPredicted RBP12.47□□□□□ -0.41
TCOF1-202ENST00000377797 COL10A1Q03692 680 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 SRSF6Q13247 344 aaKnown RBP12.47□□□□□ -0.41
TCOF1-202ENST00000377797 AP1S3Q96PC3 154 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 REPIN1Q9BWE0 567 aaKnown RBP12.47□□□□□ -0.41
TCOF1-202ENST00000377797 ZNF665Q9H7R5 613 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 WISP1O95388 367 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 HRASP01112 189 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 IGHV1-2P23083 117 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 FOXG1P55316 489 aaPredicted RBP12.47□□□□□ -0.41
TCOF1-202ENST00000377797 OR5C1Q8NGR4 320 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 ZNF524Q96C55 264 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 SSX3Q99909 188 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 DHRS9Q9BPW9 319 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 NUDT16L1Q9BRJ7 211 aaKnown RBP12.47□□□□□ -0.41
TCOF1-202ENST00000377797 PARD6AQ9NPB6 346 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 SPRR3Q9UBC9 169 aa12.47□□□□□ -0.41
TCOF1-202ENST00000377797 OR13C7P0DN81 318 aa12.46□□□□□ -0.41
TCOF1-202ENST00000377797 RCC1P18754 421 aaPredicted RBP12.46□□□□□ -0.41
TCOF1-202ENST00000377797 ERHP84090 104 aaKnown RBP12.46□□□□□ -0.41
TCOF1-202ENST00000377797 PLAC9Q5JTB6 97 aa12.46□□□□□ -0.41
TCOF1-202ENST00000377797 PLA2G2CQ5R387 149 aa12.46□□□□□ -0.41
TCOF1-202ENST00000377797 SEZ6L2Q6UXD5 910 aa12.46□□□□□ -0.41
TCOF1-202ENST00000377797 CALHM1Q8IU99 346 aa12.46□□□□□ -0.41
TCOF1-202ENST00000377797 J3QW42 95 aa12.46□□□□□ -0.41
TCOF1-202ENST00000377797 CECR9P0C854 216 aa12.46□□□□□ -0.41
TCOF1-202ENST00000377797 MRPS11P82912 194 aaKnown RBP12.46□□□□□ -0.41
TCOF1-202ENST00000377797 SSX8Q7RTT4 187 aa12.46□□□□□ -0.41
TCOF1-202ENST00000377797 MOB3BQ86TA1 216 aa12.46□□□□□ -0.41
TCOF1-202ENST00000377797 SLC35E1Q96K37 410 aa12.46□□□□□ -0.41
TCOF1-202ENST00000377797 ABCA4P78363 2273 aa12.46□□□□□ -0.41
TCOF1-202ENST00000377797 TMEM33P57088 247 aa12.46□□□□□ -0.42
TCOF1-202ENST00000377797 SAXO1Q8IYX7 474 aa12.46□□□□□ -0.42
TCOF1-202ENST00000377797 RAB1CQ92928 201 aa12.46□□□□□ -0.42
TCOF1-202ENST00000377797 LHX4Q969G2 390 aa12.46□□□□□ -0.42
TCOF1-202ENST00000377797 PINX1Q96BK5 328 aaKnown RBP12.46□□□□□ -0.42
TCOF1-202ENST00000377797 CHRNB4P30926 498 aa12.46□□□□□ -0.42
TCOF1-202ENST00000377797 ERVS71-1P61550 626 aa12.46□□□□□ -0.42
TCOF1-202ENST00000377797 FAM27E3Q08E93 113 aa12.46□□□□□ -0.42
TCOF1-202ENST00000377797 HAGHQ16775 308 aa12.46□□□□□ -0.42
TCOF1-202ENST00000377797 FGFBP3Q8TAT2 258 aa12.46□□□□□ -0.42
TCOF1-202ENST00000377797 NANPQ8TBE9 248 aa12.46□□□□□ -0.42
TCOF1-202ENST00000377797 TIMM8BQ9Y5J9 83 aaPredicted RBP12.46□□□□□ -0.42
TCOF1-202ENST00000377797 WDR87Q6ZQQ6 2873 aa12.46□□□□□ -0.42
TCOF1-202ENST00000377797 IGKV1-9A0A0C4DH69 117 aa12.45□□□□□ -0.42
TCOF1-202ENST00000377797 PPP1CCP36873 323 aaKnown RBP12.45□□□□□ -0.42
TCOF1-202ENST00000377797 CEBPDP49716 269 aaPredicted RBP12.45□□□□□ -0.42
TCOF1-202ENST00000377797 TAGLNQ01995 201 aaKnown RBP12.45□□□□□ -0.42
TCOF1-202ENST00000377797 NTNG2Q96CW9 530 aa12.45□□□□□ -0.42
TCOF1-202ENST00000377797 GFI1Q99684 422 aa12.45□□□□□ -0.42
TCOF1-202ENST00000377797 NIPSNAP3BQ9BS92 247 aa12.45□□□□□ -0.42
TCOF1-202ENST00000377797 PRO3102Q9H379 93 aa12.45□□□□□ -0.42
TCOF1-202ENST00000377797 CACFD1Q9UGQ2 172 aa12.45□□□□□ -0.42
TCOF1-202ENST00000377797 NPTNQ9Y639 398 aa12.45□□□□□ -0.42
TCOF1-202ENST00000377797 BTBD17A6NE02 478 aa12.45□□□□□ -0.42
TCOF1-202ENST00000377797 METTL15P1P0C7V9 234 aa12.45□□□□□ -0.42
TCOF1-202ENST00000377797 RPL7L1Q6DKI1 246 aaKnown RBP12.45□□□□□ -0.42
TCOF1-202ENST00000377797 SOSTQ9BQB4 213 aa12.45□□□□□ -0.42
TCOF1-202ENST00000377797 GNG13Q9P2W3 67 aa12.45□□□□□ -0.42
TCOF1-202ENST00000377797 IGKV3D-15A0A087WSY6 115 aa12.45□□□□□ -0.42
TCOF1-202ENST00000377797 CD74P04233 296 aa12.45□□□□□ -0.42
TCOF1-202ENST00000377797 RPS2P15880 293 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms