RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 SLC7A10Q9NS82 523 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 TMEM242Q9NWH2 141 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 P4HTMQ9NXG6 502 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 FKBP11Q9NYL4 201 aa11.12□□□□□ -0.63
SFSWAP-209ENST00000540469 SLC25A47Q6Q0C1 308 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 KLHDC7BQ96G42 594 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 NAT8Q9UHE5 227 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 VAX2Q9UIW0 290 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 MYO15AQ9UKN7 3530 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 SPTY2D1-AS1A0A0U1RR47 76 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 MAP1LC3B2A6NCE7 125 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 TRAF3IP2O43734 574 aaPredicted RBP11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 IAPPP10997 89 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 FGF5P12034 268 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 RTP5Q14D33 572 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 HERPUD1Q15011 391 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 ARL6IP6Q8N6S5 226 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 SSC4DQ8WTU2 575 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 MAP1LC3BQ9GZQ8 125 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 OR51I2Q9H344 312 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 RBKSQ9H477 322 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 CDH20Q9HBT6 801 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 Q9N2K0 584 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 SLC39A9Q9NUM3 307 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 TCFL5Q9UL49 500 aa11.11□□□□□ -0.63
SFSWAP-209ENST00000540469 IGKV3D-11A0A0A0MRZ8 115 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 H3BMH7 237 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 TMEM50AO95807 157 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 METTL15P1P0C7V9 234 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 GAPTQ8N292 157 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 OR51H1Q8NH63 302 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 ADGRG7Q96K78 797 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 VSIRQ9H7M9 311 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 MYOTQ9UBF9 498 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 TRANK1O15050 2925 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 ZNF737O75373 536 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 S100GP29377 79 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 TEX38Q6PEX7 206 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 DPPA3Q6W0C5 159 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 SELENOHQ8IZQ5 122 aaKnown RBP11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 CARFQ8N187 725 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 OXGR1Q96P68 337 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 LRRC61Q9BV99 259 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 HS3ST3A1Q9Y663 406 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 CPAMD8Q8IZJ3 1885 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 MUC3AQ02505 3323 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 ZNF814B7Z6K7 855 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 SERPINE2P07093 398 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 TCN2P20062 427 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 VDAC1P21796 283 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 ERVFC1-1P60608 527 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 SNAI3Q3KNW1 292 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 SLC25A26Q70HW3 274 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 SPSB1Q96BD6 273 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 ELOVL1Q9BW60 279 aa11.1□□□□□ -0.63
SFSWAP-209ENST00000540469 A0A1W2PNV4 684 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 DEFB119Q8N690 84 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 PIGCQ92535 297 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 ACY3Q96HD9 319 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 SPOCK3Q9BQ16 436 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 A0A0U1RQV5 110 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 PDCD6O75340 191 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 RPLP1P05386 114 aaKnown RBP11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 S100A7P31151 101 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 CCKARP32238 428 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 IZUMO4Q1ZYL8 232 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 MRGPRGQ86SM5 289 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 OR2V1Q8NHB1 315 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 TMEM208Q9BTX3 173 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 PPP1R14DQ9NXH3 145 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 ADAMTS9Q9P2N4 1935 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 A0A1W2PR80 420 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 NPIPA2E9PIF3 369 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 NPIPA3F8WFD2 350 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 EFNA2O43921 213 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 IL18BPO95998 194 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 ZNF16P17020 682 aaPredicted RBP11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 SHBQ15464 509 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 ACOT6Q3I5F7 207 aaPredicted RBP11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 PLCXD3Q63HM9 321 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 D2HGDHQ8N465 521 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 OR10G4Q8NGN3 311 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 OR2T10Q8NGZ9 312 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 MRGPRX4Q96LA9 322 aa11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 RBM7Q9Y580 266 aaKnown RBP11.09□□□□□ -0.63
SFSWAP-209ENST00000540469 CHD3Q12873 2000 aaKnown RBP11.08□□□□□ -0.64
SFSWAP-209ENST00000540469 IGHV3-15A0A0B4J1V0 119 aa11.08□□□□□ -0.64
SFSWAP-209ENST00000540469 TRBV11-1A0A0K0K1C0 115 aa11.08□□□□□ -0.64
SFSWAP-209ENST00000540469 CEACAM6P40199 344 aa11.08□□□□□ -0.64
SFSWAP-209ENST00000540469 UCP3P55916 312 aa11.08□□□□□ -0.64
SFSWAP-209ENST00000540469 FAM3BP58499 235 aaPredicted RBP11.08□□□□□ -0.64
SFSWAP-209ENST00000540469 DEFB133Q30KQ1 61 aa11.08□□□□□ -0.64
SFSWAP-209ENST00000540469 TMEM41BQ5BJD5 291 aa11.08□□□□□ -0.64
SFSWAP-209ENST00000540469 CRIP3Q6Q6R5 217 aa11.08□□□□□ -0.64
SFSWAP-209ENST00000540469 BTNL3Q6UXE8 466 aa11.08□□□□□ -0.64
SFSWAP-209ENST00000540469 TMEM92Q6UXU6 159 aa11.08□□□□□ -0.64
SFSWAP-209ENST00000540469 OR4F5Q8NH21 305 aa11.08□□□□□ -0.64
SFSWAP-209ENST00000540469 FAM131CQ96AQ9 280 aa11.08□□□□□ -0.64
SFSWAP-209ENST00000540469 MS4A10Q96PG2 267 aa11.08□□□□□ -0.64
SFSWAP-209ENST00000540469 OR4F4Q96R69 305 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms