RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 ECDO95905 644 aaPredicted RBP11.31□□□□□ -0.6
CD44-224ENST00000526669 CD3GP09693 182 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 TAS2R20P59543 309 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 PAX2Q02962 417 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 PRB3Q04118 309 aaPredicted RBP11.31□□□□□ -0.6
CD44-224ENST00000526669 KRTAP1-1Q07627 177 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 ARFRP1Q13795 201 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 ZNF260Q3ZCT1 412 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 RNASE12Q5GAN4 147 aaKnown RBP11.31□□□□□ -0.6
CD44-224ENST00000526669 DCAF12L2Q5VW00 463 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 SLC35E4Q6ICL7 350 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 CNIH2Q6PI25 160 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 ZNF497Q6ZNH5 498 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 GLCCI1Q86VQ1 547 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 OR13A1Q8NGR1 328 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 MRPL30Q8TCC3 161 aaKnown RBP11.31□□□□□ -0.6
CD44-224ENST00000526669 MRGPRDQ8TDS7 321 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 NUDCD2Q8WVJ2 157 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 TMEM186Q96B77 213 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 CMTM3Q96MX0 182 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 CMSS1Q9BQ75 279 aaKnown RBP11.31□□□□□ -0.6
CD44-224ENST00000526669 ADAM30Q9UKF2 790 aa11.31□□□□□ -0.6
CD44-224ENST00000526669 MRPS7Q9Y2R9 242 aaKnown RBP11.31□□□□□ -0.6
CD44-224ENST00000526669 TRBV23-1A0A0A0MS06 115 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 TRAV20A0A0B4J274 112 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 FUOMA2VDF0 154 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 MEIS3P1A6NDR6 274 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 GPR37O15354 613 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 XRCC3O43542 346 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 MT-ND4P03905 459 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 GLAP06280 429 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 ERP29P30040 261 aaKnown RBP11.3□□□□□ -0.6
CD44-224ENST00000526669 DVL1P1P54792 670 aaPredicted RBP11.3□□□□□ -0.6
CD44-224ENST00000526669 DLX1P56177 255 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 ERVFRD-1P60508 538 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 ARF6P62330 175 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 GUCA2AQ02747 115 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 TMEM200BQ69YZ2 307 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 Q6ZPA2 131 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 SNX29P2Q8IUI4 249 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 LY6G5BQ8NDX9 201 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 C8orf46Q8TAG6 207 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 MAFIPQ8WZ33 124 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 DACT3Q96B18 629 aaPredicted RBP11.3□□□□□ -0.6
CD44-224ENST00000526669 DIRAS2Q96HU8 199 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 MMP27Q9H306 513 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 TRAPPC2LQ9UL33 140 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 POLR3KQ9Y2Y1 108 aaPredicted RBP11.3□□□□□ -0.6
CD44-224ENST00000526669 INSIG2Q9Y5U4 225 aa11.3□□□□□ -0.6
CD44-224ENST00000526669 TRGV10A0A0A0MS01 117 aa11.29□□□□□ -0.6
CD44-224ENST00000526669 A0A0A6YYH2 397 aa11.29□□□□□ -0.6
CD44-224ENST00000526669 hADV38S2A0JD32 116 aa11.29□□□□□ -0.6
CD44-224ENST00000526669 A6NJ64 397 aa11.29□□□□□ -0.6
CD44-224ENST00000526669 FCER2P06734 321 aa11.29□□□□□ -0.6
CD44-224ENST00000526669 LIPFP07098 398 aa11.29□□□□□ -0.6
CD44-224ENST00000526669 GSTP1P09211 210 aaKnown RBP11.29□□□□□ -0.6
CD44-224ENST00000526669 TNFSF8P32971 234 aa11.29□□□□□ -0.6
CD44-224ENST00000526669 GNG2P59768 71 aa11.29□□□□□ -0.6
CD44-224ENST00000526669 MRPS15P82914 257 aaKnown RBP11.29□□□□□ -0.6
CD44-224ENST00000526669 MEF2CQ06413 473 aaPredicted RBP11.29□□□□□ -0.6
CD44-224ENST00000526669 LTC4SQ16873 150 aa11.29□□□□□ -0.6
CD44-224ENST00000526669 BTNL3Q6UXE8 466 aa11.29□□□□□ -0.6
CD44-224ENST00000526669 ZNF714Q96N38 554 aa11.29□□□□□ -0.6
CD44-224ENST00000526669 AUNIPQ9H7T9 357 aa11.29□□□□□ -0.6
CD44-224ENST00000526669 ZNF230Q9UIE0 474 aaPredicted RBP11.29□□□□□ -0.6
CD44-224ENST00000526669 LINC00312Q9Y6C7 94 aa11.29□□□□□ -0.6
CD44-224ENST00000526669 TEP1Q99973 2627 aaKnown RBP11.28□□□□□ -0.6
CD44-224ENST00000526669 KIR2DS1A0A191URI9 304 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 SERPINE3A8MV23 424 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 CD5LO43866 347 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 SSX5O60225 188 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 CLPXO76031 633 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 LY6G6DO95868 133 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 NAPSAO96009 420 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 RCC1P18754 421 aaPredicted RBP11.28□□□□□ -0.6
CD44-224ENST00000526669 S100A5P33763 92 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 SSTR5P35346 364 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 TALDO1P37837 337 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 MNDAP41218 407 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 PRAMEF5Q5TYX0 476 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 HACD4Q5VWC8 232 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 FAHD2BQ6P2I3 314 aaPredicted RBP11.28□□□□□ -0.6
CD44-224ENST00000526669 ZNF782Q6ZMW2 699 aaPredicted RBP11.28□□□□□ -0.6
CD44-224ENST00000526669 Q71RC1 249 aaPredicted RBP11.28□□□□□ -0.6
CD44-224ENST00000526669 PRR18Q8N4B5 295 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 OR6Q1Q8NGQ2 317 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 RFESDQ8TAC1 157 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 FAHD2AQ96GK7 314 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 PCGF1Q9BSM1 259 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 GSX1Q9H4S2 264 aaPredicted RBP11.28□□□□□ -0.6
CD44-224ENST00000526669 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.28□□□□□ -0.6
CD44-224ENST00000526669 SIRT7Q9NRC8 400 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 YAE1D1Q9NRH1 226 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 OR6C3Q9NZP0 311 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 LPAR3Q9UBY5 353 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 A3GALT2U3KPV4 340 aa11.28□□□□□ -0.6
CD44-224ENST00000526669 HIVEP2P31629 2446 aa11.27□□□□□ -0.6
CD44-224ENST00000526669 A0A0G2JMP0 313 aa11.27□□□□□ -0.61
CD44-224ENST00000526669 A0A0X1KG70 313 aa11.27□□□□□ -0.61
CD44-224ENST00000526669 MEIOCA2RUB1 952 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms