RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TRMUO75648 421 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 MOSP00540 346 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 RPLP1P05386 114 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 NQO2P16083 231 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 PTNP21246 168 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 SLC25A11Q02978 314 aaKnown RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 GLIPR1L1Q6UWM5 242 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 KIR3DL3Q8N743 410 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 OR5AU1Q8NGC0 362 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 OR51L1Q8NGJ5 315 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 PRSS3P2Q8NHM4 247 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 TNFRSF14Q92956 283 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 USMG5Q96IX5 58 aa3.54□□□□□ -1.84
USH2A-202ENST00000366942 SLC25A21Q9BQT8 299 aaPredicted RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 FOXA2Q9Y261 457 aaPredicted RBP3.54□□□□□ -1.84
USH2A-202ENST00000366942 LRRK2Q5S007 2527 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 PTPN13Q12923 2485 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 UPK2O00526 184 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 NKX2-2O95096 273 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 MPV17P39210 176 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 CXCR4P61073 352 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 CACNG7P62955 275 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 ZNF66Q6ZN08 573 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 TIFABQ6ZNK6 161 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 PIP4P1Q86T03 277 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 DVL3Q92997 716 aaPredicted RBP3.53□□□□□ -1.84
USH2A-202ENST00000366942 ISOC2Q96AB3 205 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 MEGF10Q96KG7 1140 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 FEVQ99581 238 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 GPR84Q9NQS5 396 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 CCDC59Q9P031 241 aaKnown RBP3.53□□□□□ -1.84
USH2A-202ENST00000366942 PDGFAP04085 211 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 WNT1P04628 370 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 MGST1P10620 155 aaKnown RBP3.53□□□□□ -1.84
USH2A-202ENST00000366942 COX6A1P12074 109 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 SLC25A4P12235 298 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 ASIPP42127 132 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 VAMP3Q15836 100 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 Q1RN00 199 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 MPV17LQ2QL34 196 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 TEPPQ6URK8 271 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 NFE4Q86UQ8 179 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 NIPSNAP1Q9BPW8 284 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 C1orf43Q9BWL3 253 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 TTTY10Q9BZA0 68 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 SLC25A22Q9H936 323 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 COX11Q9Y6N1 276 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 A0A1B0GVG6 124 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 GYPAP02724 150 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 METAP1P53582 386 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 HNRNPA0Q13151 305 aaKnown RBP3.53□□□□□ -1.84
USH2A-202ENST00000366942 ZNF674Q2M3X9 581 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 TMEM249Q2WGJ8 235 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 HIKESHIQ53FT3 197 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 PLA2G2CQ5R387 149 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 LAX1Q8IWV1 398 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 SLC26A10Q8NG04 563 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 RFESDQ8TAC1 157 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 OSR1Q8TAX0 266 aaPredicted RBP3.53□□□□□ -1.84
USH2A-202ENST00000366942 C17orf50Q8WW18 174 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 GPR82Q96P67 336 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 AQP10Q96PS8 301 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 DMRTA2Q96SC8 542 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 MSL2Q9HCI7 577 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 NEU3Q9UQ49 428 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 ALPK2Q86TB3 2170 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 TRGV11A0A075B6L2 103 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 LIPT2A6NK58 231 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 NTN3O00634 580 aaPredicted RBP3.53□□□□□ -1.84
USH2A-202ENST00000366942 AKAIN1P0CW23 69 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 PAX1P15863 534 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 COX5AP20674 150 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 PRTN3P24158 256 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 MYCNOSP40205 109 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 FXYD3Q14802 87 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 MST1LQ2TV78 715 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 ZNF672Q499Z4 452 aaPredicted RBP3.53□□□□□ -1.84
USH2A-202ENST00000366942 CYP4V2Q6ZWL3 525 aaPredicted RBP3.53□□□□□ -1.84
USH2A-202ENST00000366942 LHFPL3Q86UP9 236 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 FAM90A1Q86YD7 464 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 EIF4E3Q8N5X7 224 aaKnown RBP3.53□□□□□ -1.84
USH2A-202ENST00000366942 OR4P4Q8NGL7 312 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 WFDC5Q8TCV5 224 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 C7orf33Q8WU49 177 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 KCNS1Q96KK3 526 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 MS4A10Q96PG2 267 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 GSX2Q9BZM3 304 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 ASCL3Q9NQ33 180 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 RHCGQ9UBD6 479 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 TNFRSF18Q9Y5U5 241 aa3.53□□□□□ -1.84
USH2A-202ENST00000366942 SERTM2A0A1B0GWG4 89 aa3.53□□□□□ -1.85
USH2A-202ENST00000366942 F5H768 121 aa3.53□□□□□ -1.85
USH2A-202ENST00000366942 H3BUX3 64 aa3.53□□□□□ -1.85
USH2A-202ENST00000366942 M0R1W7 72 aa3.53□□□□□ -1.85
USH2A-202ENST00000366942 OR2J3O76001 311 aa3.53□□□□□ -1.85
USH2A-202ENST00000366942 NGFRP08138 427 aa3.53□□□□□ -1.85
USH2A-202ENST00000366942 RPA2P15927 270 aa3.53□□□□□ -1.85
USH2A-202ENST00000366942 EVX1P49640 407 aa3.53□□□□□ -1.85
USH2A-202ENST00000366942 UFM1P61960 85 aa3.53□□□□□ -1.85
USH2A-202ENST00000366942 SELENOWP63302 87 aa3.53□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms