RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 DIMT1Q9UNQ2 313 aaKnown RBP7.09□□□□□ -1.27
USP28-205ENST00000537706 B9D1Q9UPM9 204 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 LSM2Q9Y333 95 aaKnown RBP7.09□□□□□ -1.27
USP28-205ENST00000537706 H0Y980 276 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 PRODHO43272 600 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 AIREO43918 545 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 NDUFB2O95178 105 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 APOC1P02654 83 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 SLC2A1P11166 492 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 GADD45AP24522 165 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 GPR4P46093 362 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 PRRX1P54821 245 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 VBP1P61758 197 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 GNG3P63215 75 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 PRKCDQ05655 676 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.09□□□□□ -1.27
USP28-205ENST00000537706 EIF2B1Q14232 305 aaKnown RBP7.09□□□□□ -1.27
USP28-205ENST00000537706 FAM76BQ5HYJ3 339 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 RNF113BQ8IZP6 322 aaKnown RBP7.09□□□□□ -1.27
USP28-205ENST00000537706 ZNF454Q8N9F8 522 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 PIGCQ92535 297 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 LGALS12Q96DT0 336 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 OR10A2Q9H208 303 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 MRPS18AQ9NVS2 196 aaKnown RBP7.09□□□□□ -1.27
USP28-205ENST00000537706 IL20Q9NYY1 176 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 CCDC59Q9P031 241 aaKnown RBP7.09□□□□□ -1.27
USP28-205ENST00000537706 GLS2Q9UI32 602 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 ERGIC3Q9Y282 383 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 TMEM5Q9Y2B1 443 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 SORL1Q92673 2214 aa7.09□□□□□ -1.28
USP28-205ENST00000537706 LINC01619G3V211 115 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 BRI3O95415 125 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 IGHG4P01861 327 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 OTX1P32242 354 aaPredicted RBP7.08□□□□□ -1.28
USP28-205ENST00000537706 LSM3P62310 102 aaKnown RBP7.08□□□□□ -1.28
USP28-205ENST00000537706 RAB40BQ12829 278 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 RPL13AP3Q6NVV1 102 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 FANK1Q8TC84 345 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 S100ZQ8WXG8 99 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 ARPC1AQ92747 370 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 DLX4Q92988 240 aaPredicted RBP7.08□□□□□ -1.28
USP28-205ENST00000537706 RPEQ96AT9 228 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 OPALINQ96PE5 141 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 MGLLQ99685 303 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 RSRP1Q9BUV0 290 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 WDR12Q9GZL7 423 aaKnown RBP7.08□□□□□ -1.28
USP28-205ENST00000537706 DCSTAMPQ9H295 470 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 RGCCQ9H4X1 137 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 AKIP1Q9NQ31 210 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 CENPMQ9NSP4 180 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 KIAA1456Q9P272 454 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 OR14J1Q9UGF5 321 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 IER3IP1Q9Y5U9 82 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 A3GALT2U3KPV4 340 aa7.08□□□□□ -1.28
USP28-205ENST00000537706 hCG_38984A0A1B0GV85 526 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 A0A1B0GVG6 124 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 UNC119BA6NIH7 251 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 MYL12BO14950 172 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 NXPH2O95156 264 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 CST4P01036 141 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 HMGN1P05114 100 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 OPRL1P41146 370 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 GPM6AP51674 278 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 MED22Q15528 200 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 GFOD2Q3B7J2 385 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 PROKR2Q8NFJ6 384 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 OR2T33Q8NG76 320 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 OR52I1Q8NGK6 324 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 RFKQ969G6 155 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 TOMM40LQ969M1 308 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 TSSK2Q96PF2 358 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 CHCHD6Q9BRQ6 235 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 SLIRPQ9GZT3 109 aaKnown RBP7.07□□□□□ -1.28
USP28-205ENST00000537706 HMG20AQ9NP66 347 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 FGF20Q9NP95 211 aaPredicted RBP7.07□□□□□ -1.28
USP28-205ENST00000537706 SIGLEC8Q9NYZ4 499 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 MRPS28Q9Y2Q9 187 aaKnown RBP7.07□□□□□ -1.28
USP28-205ENST00000537706 AMMECR1Q9Y4X0 333 aaPredicted RBP7.07□□□□□ -1.28
USP28-205ENST00000537706 LINC00312Q9Y6C7 94 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 DNAH10Q8IVF4 4471 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 SHISA3A0PJX4 238 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 I3L521 148 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 K7N7A8 449 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 CDC42EP2O14613 210 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 ARPC1BO15143 372 aaKnown RBP7.07□□□□□ -1.28
USP28-205ENST00000537706 HSMCR30P0CW71 290 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 MYL12AP19105 171 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 HSD11B1P28845 292 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 DCTDP32321 178 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 GRB2P62993 217 aaKnown RBP7.07□□□□□ -1.28
USP28-205ENST00000537706 MLLT11Q13015 90 aaPredicted RBP7.07□□□□□ -1.28
USP28-205ENST00000537706 ZNF846Q147U1 533 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 SPHARQ15513 63 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 ASPHD1Q5U4P2 390 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 BCDIN3DQ7Z5W3 292 aaKnown RBP7.07□□□□□ -1.28
USP28-205ENST00000537706 TRAPPC6BQ86SZ2 158 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 NANOGP1Q8N7R0 232 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 POC1AQ8NBT0 407 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 OR52L1Q8NGH7 329 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 SGK3Q96BR1 496 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms