RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SAMD12Q8N8I0 201 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 KCTD12Q96CX2 325 aaKnown RBP12.38□□□□□ -0.43
NUP54-213ENST00000513352 FAHD2AQ96GK7 314 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 DCUN1D5Q9BTE7 237 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 SHARPINQ9H0F6 387 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 MMP26Q9NRE1 261 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 C19orf12Q9NSK7 152 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 PLEKHJ1Q9NW61 149 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 ETAA1Q9NY74 926 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 NDUFA13Q9P0J0 144 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 SPATA2Q9UM82 520 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 F8P00451 2351 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 KIAA2026Q5HYC2 2103 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 VPS13CQ709C8 3753 aa12.38□□□□□ -0.43
NUP54-213ENST00000513352 A0A075B6Q4 140 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 TRBV23-1A0A0A0MS06 115 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 A0A0G2JMP0 313 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 A0A0X1KG70 313 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 CHATP28329 748 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 GLIPR1P48060 266 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 P2RX3P56373 397 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 C6orf201Q7Z4U5 140 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 BIVMQ86UB2 503 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 OR4M2Q8NGB6 313 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 PLPPR1Q8TBJ4 325 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 DYNC2LI1Q8TCX1 351 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 ACOT12Q8WYK0 555 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 DYRK2Q92630 601 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 PTX4Q96A99 478 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 CCDC59Q9P031 241 aaKnown RBP12.37□□□□□ -0.43
NUP54-213ENST00000513352 RCC2Q9P258 522 aaKnown RBP12.37□□□□□ -0.43
NUP54-213ENST00000513352 POLR3KQ9Y2Y1 108 aaPredicted RBP12.37□□□□□ -0.43
NUP54-213ENST00000513352 ZANQ9Y493 2812 aa12.37□□□□□ -0.43
NUP54-213ENST00000513352 DSCAML1Q8TD84 2053 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 HIVEP1P15822 2718 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 TLN2Q9Y4G6 2542 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 MEIKINA0A087WXM9 373 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 hADV38S2A0JD32 116 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 ZNF701M0R085 212 aaPredicted RBP12.36□□□□□ -0.43
NUP54-213ENST00000513352 CSN2P05814 226 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 LIPFP07098 398 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 GLP1RP43220 463 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 KCNJ3P48549 501 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 KRTAP1-1Q07627 177 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 C11orf91Q3C1V1 193 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 MOGAT2Q3SYC2 334 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 UBE2NLQ5JXB2 153 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 Q6ZTK2 550 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 RTN4RL2Q86UN3 420 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 FAM89BQ8N5H3 189 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 OR10R2Q8NGX6 335 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 SLC25A38Q96DW6 304 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 RAB3CQ96E17 227 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 COQ2Q96H96 371 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 POM121Q96HA1 1249 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 ARHGAP5-AS1Q96IT6 56 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 SULT4A1Q9BR01 284 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 FAAP24Q9BTP7 215 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 GSX1Q9H4S2 264 aaPredicted RBP12.36□□□□□ -0.43
NUP54-213ENST00000513352 CHMP1AQ9HD42 196 aaPredicted RBP12.36□□□□□ -0.43
NUP54-213ENST00000513352 LPAR3Q9UBY5 353 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 KIF25Q9UIL4 384 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 INSIG2Q9Y5U4 225 aa12.36□□□□□ -0.43
NUP54-213ENST00000513352 TRGV10A0A0A0MS01 117 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 A0A1W2PPH5 198 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 TMEM30CPA0ZSE6 113 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 ODAMA1E959 279 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 FAM25AB3EWG3 89 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 FAM25CB3EWG5 89 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 FAM25GB3EWG6 89 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 HAX1O00165 279 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 SCGNO76038 276 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 GATA3P23771 443 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 ARF6P62330 175 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 MRPS15P82914 257 aaKnown RBP12.35□□□□□ -0.43
NUP54-213ENST00000513352 MEF2CQ06413 473 aaPredicted RBP12.35□□□□□ -0.43
NUP54-213ENST00000513352 METTL11BQ5VVY1 283 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 Q71RC1 249 aaPredicted RBP12.35□□□□□ -0.43
NUP54-213ENST00000513352 CMTM4Q8IZR5 234 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 C8orf46Q8TAG6 207 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 DGCR14Q96DF8 476 aaKnown RBP12.35□□□□□ -0.43
NUP54-213ENST00000513352 CYYR1Q96J86 154 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 PECRQ9BY49 303 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 C7orf69Q9H7B7 122 aa12.35□□□□□ -0.43
NUP54-213ENST00000513352 TRAV39A0A0B4J263 110 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 KIR2DS1A0A191URI9 304 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 A8MV72 311 aaPredicted RBP12.34□□□□□ -0.43
NUP54-213ENST00000513352 RGS5O15539 181 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 HPGDSO60760 199 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 GLAP06280 429 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 GNB3P16520 340 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 CCL3L1P16619 93 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 ERP29P30040 261 aaKnown RBP12.34□□□□□ -0.43
NUP54-213ENST00000513352 PAX2Q02962 417 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 ZNF273Q14593 569 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 RSBN1Q5VWQ0 802 aaPredicted RBP12.34□□□□□ -0.43
NUP54-213ENST00000513352 TMEM200BQ69YZ2 307 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 SLC35E4Q6ICL7 350 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 DTX3Q8N9I9 347 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 LY6G5BQ8NDX9 201 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms